BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3750.1
(808 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 94 2e-22
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 6e-13
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 66 4e-11
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 56 1e-07
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 94.4 bits (233), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
Query: 377 GKMKVIKGALVIMKEEKIAANMYMLQGETQQEGEVSVASTSSIEESTNIWHQKLGHISEQ 436
G +KV+KG I+K + ++Y+LQG + GE ++A T+ E T +WH +L H+S++
Sbjct: 27 GVLKVLKGCRTILKGNR-HDSLYILQGSVET-GESNLAETAKDE--TRLWHSRLAHMSQR 82
Query: 437 GMKILVEQNLLPGLKNVSLPFCEHCVTSKQHRLKFSSSNARSKTILELVHSDVWQSPVIS 496
GM++LV++ L K SL FCE C+ K HR+ FS+ +K L+ VHSD+W +P +
Sbjct: 83 GMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142
Query: 497 L 497
L
Sbjct: 143 L 143
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 66.6 bits (161), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 588 MNRTLLEGTRAMLRAAGMDKSFWAEAVKTACYVINRSPSTAIDLKTPMQMWTGKPADYSR 647
MNRT++E R+ML G+ K+F A+A TA ++IN+ PSTAI+ P ++W YS
Sbjct: 1 MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60
Query: 648 LHMFGSPVYV 657
L FG Y+
Sbjct: 61 LRRFGCVAYI 70
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 143/331 (43%), Gaps = 43/331 (12%)
Query: 46 AKWNEI---DGNAIANLHLALADGVLSSVAEKASAKEIWDTLTKLYETKSLHN--KIFLK 100
+KW + D A+ L +L D V +SAK++WD L K E ++ ++ ++
Sbjct: 61 SKWRDFVVKDAKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIR 120
Query: 101 R---RLYTLRMMESTTVTNHINTLNTLFSQLTSIGHNMDTVERGEILLQSLPDSYDQLII 157
R +L L+M++ + +++++ + +L E + + +L S+D L
Sbjct: 121 RLEKQLEDLKMVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDS 180
Query: 158 NITTNIEVLSFDDIAAAVLEEENRRKNKEDRQESSQHAEALTMMRGRSMERGSSGSQKQS 217
+ I+V + +++E R ++ S E G K
Sbjct: 181 MLEELIDVHKM--TSKSLVEYFYYRVHES------------------STEEAIFGLLKDL 220
Query: 218 RSKSRSKKNVKCHYCGKKGHYKRECWNLKKKEGKSPELSNAQGCVAGTSDEGEILYSEAT 277
R KS+S+K C C K H + +C + + E DE + Y T
Sbjct: 221 RLKSKSEK--WCGLCYKNNHNQEDCKFRIHTDKEEKE------------DEIVVDYRLET 266
Query: 278 TVHEGRRNFAE-IWLMDSGATWHMTPRREWFHQYEPTSGGSVYMGDDHFVEIAGIGSIKL 336
+ G + + + IW++ A +MTP ++F + T +V D + + G G +K+
Sbjct: 267 VPNLGAKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKI 326
Query: 337 KMYDGTVRTIQEVRHVKGLKKNLLSVGQLDS 367
+M +G +TI+ V V GL +N+LS G++ S
Sbjct: 327 RMKEGKKKTIRNVIFVPGLNRNVLSFGKMVS 357
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 103/280 (36%), Gaps = 23/280 (8%)
Query: 7 IEKFNGNNFSLWKMKMKAILRKDNCLAAIED---------------RRVDMLDDA--KWN 49
I +F+G ++ W +M+ L++ + + R + D KW
Sbjct: 195 ISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWL 254
Query: 50 EIDGNAIANLHLALADGVLSSVAEK-ASAKEIWDTLTKLYETKSLHNKIFLKRRLYTLRM 108
D +L +L+D + ++K AKE+WD L +Y+ +K R+ RM
Sbjct: 255 RDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRM 314
Query: 109 MESTTVTNHINTLNTLFSQLTSIGHNMDTVERGEILLQSLPDSYDQLIINITTNIEVLSF 168
+E + + N + + S G +D ++ P S+ + E L
Sbjct: 315 VEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEE-EYLPV 373
Query: 169 DDIAAAVLEEENRRKNKEDRQESSQHAEALTMMRGRSMERGSSGSQKQSRSKSRSKKN-- 226
+ V EE +N + M R S+ GSQ + +++
Sbjct: 374 WMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDER 433
Query: 227 --VKCHYCGKKGHYKRECWNLKKKEGKSPELSNAQGCVAG 264
+ C CG+KGH + CW K E S + + VA
Sbjct: 434 VIIVCDNCGRKGHLAKHCWGSKSDERASGKSNRINSSVAA 473