BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3810.1
(477 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 82 1e-16
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 79 5e-16
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 63 5e-11
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 30/255 (11%)
Query: 34 LVSIRLDNTNYLLWKSQLLPILHSQDLYKFVNGTYPPPPEFLPSSSESGTSVSLPNPYYA 93
V++ L+ NY +W+ + S + ++G+ P P +E
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTP-----MTEKR----------- 66
Query: 94 YWYRVDQMLLSWLNATLTEPILTQVLGL-TSSRAVWESLERSLSSFNSARLMNLKLQLQT 152
W D ++ W+ T+T+ +L ++ + ++R +W SLE AR + + +L+T
Sbjct: 67 -WKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRT 125
Query: 153 SKKGSLSVSEFLLRLKGITNSLAAIGHPVNDEELVLIILSGLGSEYEGFVTSITTRLIPP 212
+ LSV E+ +LK +++ L + P++D LV+ +L+GL +Y+ + I + P
Sbjct: 126 TTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFP 185
Query: 213 TFSEFHSQLRTHEFRLQLLQSNVSQPTAHYSPSP------------PTSFTNSTRGRGRG 260
+F+E S L E RL + T H S S P + N+ GRG
Sbjct: 186 SFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRG 245
Query: 261 GYTKSNRGRGAYFGR 275
K NRG G+ GR
Sbjct: 246 RSKKKNRGGGSSDGR 260
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 126/282 (44%), Gaps = 41/282 (14%)
Query: 28 LTNIANLVSIRLD--NTNYLLWKSQLLPILHSQDLYKFVNGTYPPPPEFLPSSSESGTSV 85
++NI + + + LD +NY W+ L S D+ ++GT LP+++
Sbjct: 13 VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------LLPTNAND---- 62
Query: 86 SLPNPYYAYWYRVDQMLLSWLNATLTEPILTQVLGLTSS--RAVWESLERSLSSFNSARL 143
W + D ++ L TLT P Q +TSS R +W ++ + AR
Sbjct: 63 -------VNWQKRDGIVKLSLYGTLT-PKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARA 114
Query: 144 MNLKLQLQTSKKGSLSVSEFLLRLKGITNSLAAIGHPVNDEELVLIILSGLGSEYEGFVT 203
+ L +L+T G + V+++ ++K + +SL + PV D LV+ +L+GL +++ +
Sbjct: 115 LRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIIN 174
Query: 204 SITTRLIPPTFSEFHSQLRTHEFRLQ---------LLQSNVSQPTAHYSPSPPTSFTNST 254
I R P+F + + L+ E RL+ + S+ S A P T+F S
Sbjct: 175 VIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSG 234
Query: 255 ------RGRGRGGYTKSNRGRGAYFGRGNFRPNSSSVLGRPP 290
RGRGRG RGRG F N P +S RPP
Sbjct: 235 GNQMGYRGRGRG--NNIFRGRGGRFSYYNM-PTFNS-WNRPP 272
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 34/206 (16%)
Query: 40 DNTNYLLWKSQLLPILHSQDLYKFVNGTYPPPPEFLPSSSESGTSVSLPNPYYAYWYRVD 99
D NY+ WK + L + F++GT P P F +P Y W + +
Sbjct: 38 DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF--------------SPLYQPWEQCN 83
Query: 100 QMLLSWLNATLTEPILTQVLGLTSSRAVWESLERSLSSFNSARLMNLKLQLQTSKKGSLS 159
M++ WL ++T+ +L V+ ++ +WE L R ++ L+ +L T ++G S
Sbjct: 84 AMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDS 143
Query: 160 VSEFLLRLKGITNSLAAI------------------GHPVNDEELVLIILSG--LGSEYE 199
V E+ +L + L+ ++E L G L +E
Sbjct: 144 VEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFE 203
Query: 200 GFVTSITTRLIPPTFSEFHSQLRTHE 225
T I + PP+ E + ++ E
Sbjct: 204 AVTTKIMFQKPPPSLHEAFAMVKDAE 229