BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3830.1
(519 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 302 1e-91
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 302 1e-91
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 141 2e-38
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 102 3e-25
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 51 8e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 302 bits (773), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 231/433 (53%), Gaps = 60/433 (13%)
Query: 144 QEPTTFNQASKITHWNQAMEEEIRALHKNRTWSLVPRHPSMNIVDSKWIYKVKQNPDGSV 203
+EP+T+N+A + W AM++EI A+ TW + P+ + KW+YK+K N DG++
Sbjct: 84 KEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143
Query: 204 LRYKARLVARGFTQQPGIDYAETFSAVVRPETIRAVISLAVSGNWGIHQLDVKNAFLQGD 263
RYKARLVA+G+TQQ GID+ ETFS V + +++ +++++ N+ +HQLD+ NAFL GD
Sbjct: 144 ERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGD 203
Query: 264 LEESVYMTQPKGFV----DPSSPSHVCKLHKALYGLKQAPRAWHKRFSDCLLQFKFIQSI 319
L+E +YM P G+ D P+ VC L K++YGLKQA R W +FS L+ F F+QS
Sbjct: 204 LDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSH 263
Query: 320 SDSSMFYLRNSNSLTILLLYVDDIIITGSSPSVIQNLIHKLKHQFDMTDMGNLRYFLGLE 379
SD + F + +L+YVDDIII ++ + + L +LK F + D+G L+YFLGLE
Sbjct: 264 SDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLE 323
Query: 380 AIRDDHSLTLTQTKYINDLLHRFGLLSSKPVSTP-----------------AITAKRI-- 420
R + + Q KY DLL GLL KP S P A +R+
Sbjct: 324 IARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIG 383
Query: 421 -LRYL------------------------------------KGTISSGLCFRRAISHQIL 443
L YL KGT+ GL + Q+
Sbjct: 384 RLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQ 443
Query: 444 GYSDADWAGSPDDRRSTTGSCVFLGPNLNMWTSKTQPTVARSSTEAEFRAVSHTCAEVRW 503
+SDA + D RRST G C+FLG +L W SK Q V++SS EAE+RA+S E+ W
Sbjct: 444 VFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMW 503
Query: 504 LTNLLFELGIPSS 516
L EL +P S
Sbjct: 504 LAQFFRELQLPLS 516
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 302 bits (773), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/433 (37%), Positives = 231/433 (53%), Gaps = 60/433 (13%)
Query: 144 QEPTTFNQASKITHWNQAMEEEIRALHKNRTWSLVPRHPSMNIVDSKWIYKVKQNPDGSV 203
+EP+T+N+A + W AM++EI A+ TW + P+ + KW+YK+K N DG++
Sbjct: 84 KEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI 143
Query: 204 LRYKARLVARGFTQQPGIDYAETFSAVVRPETIRAVISLAVSGNWGIHQLDVKNAFLQGD 263
RYKARLVA+G+TQQ GID+ ETFS V + +++ +++++ N+ +HQLD+ NAFL GD
Sbjct: 144 ERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGD 203
Query: 264 LEESVYMTQPKGFV----DPSSPSHVCKLHKALYGLKQAPRAWHKRFSDCLLQFKFIQSI 319
L+E +YM P G+ D P+ VC L K++YGLKQA R W +FS L+ F F+QS
Sbjct: 204 LDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSH 263
Query: 320 SDSSMFYLRNSNSLTILLLYVDDIIITGSSPSVIQNLIHKLKHQFDMTDMGNLRYFLGLE 379
SD + F + +L+YVDDIII ++ + + L +LK F + D+G L+YFLGLE
Sbjct: 264 SDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLE 323
Query: 380 AIRDDHSLTLTQTKYINDLLHRFGLLSSKPVSTP-----------------AITAKRI-- 420
R + + Q KY DLL GLL KP S P A +R+
Sbjct: 324 IARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIG 383
Query: 421 -LRYL------------------------------------KGTISSGLCFRRAISHQIL 443
L YL KGT+ GL + Q+
Sbjct: 384 RLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQ 443
Query: 444 GYSDADWAGSPDDRRSTTGSCVFLGPNLNMWTSKTQPTVARSSTEAEFRAVSHTCAEVRW 503
+SDA + D RRST G C+FLG +L W SK Q V++SS EAE+RA+S E+ W
Sbjct: 444 VFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMW 503
Query: 504 LTNLLFELGIPSS 516
L EL +P S
Sbjct: 504 LAQFFRELQLPLS 516
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 141 bits (355), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 112/223 (50%), Gaps = 55/223 (24%)
Query: 336 LLLYVDDIIITGSSPSVIQNLIHKLKHQFDMTDMGNLRYFLGLEAIRDDHSLTLTQTKYI 395
LLLYVDDI++TGSS +++ LI +L F M D+G + YFLG++ L L+QTKY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 396 NDLLHRFGLLSSKPVSTPA----------------------------------------- 414
+L+ G+L KP+STP
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122
Query: 415 ITAKRI--------------LRYLKGTISSGLCFRRAISHQILGYSDADWAGSPDDRRST 460
I +R+ LRY+KGTI GL + + + D+DWAG RRST
Sbjct: 123 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 182
Query: 461 TGSCVFLGPNLNMWTSKTQPTVARSSTEAEFRAVSHTCAEVRW 503
TG C FLG N+ W++K QPTV+RSSTE E+RA++ T AE+ W
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 102 bits (254), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 6/129 (4%)
Query: 117 MITRSRDGTRK--SKILLTTNDSSLDFQFQEPTTFNQASKITHWNQAMEEEIRALHKNRT 174
M+TRS+ G K K LT + +EP + A K W QAM+EE+ AL +N+T
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTTIK----KEPKSVIFALKDPGWCQAMQEELDALSRNKT 56
Query: 175 WSLVPRHPSMNIVDSKWIYKVKQNPDGSVLRYKARLVARGFTQQPGIDYAETFSAVVRPE 234
W LVP + NI+ KW++K K + DG++ R KARLVA+GF Q+ GI + ET+S VVR
Sbjct: 57 WILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTA 116
Query: 235 TIRAVISLA 243
TIR ++++A
Sbjct: 117 TIRTILNVA 125
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 51.2 bits (121), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 399 LHRFGLLSSKPVSTPAITAKRILRYLKGTISSGLCFRRAISHQILGYSDADWAGSPDDRR 458
++R SS + ++L Y+KGT+ GL + Q+ ++D+DWA PD RR
Sbjct: 14 VNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRR 73
Query: 459 STTGSC 464
S TG C
Sbjct: 74 SVTGFC 79