BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g3960.1
         (423 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    48   1e-05
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C...    47   2e-05

>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 15/112 (13%)

Query: 277 VSEEPD---ECFS------DKWMLDSGASHHMCPNRKWFTTY-RSIDGGTVIMVNDNICK 326
           ++E PD   ECFS      + W++ S  S+HM P+ K+FTT  RS       +  D    
Sbjct: 248 LNEVPDHVAECFSKYTFHENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSET 307

Query: 327 TV----GLGTIRIQMHDGVVRTLTDVRHIPDLRKNLISLGVLERNGCKIVIE 374
           TV    G+G +    ++G  +T+ +V ++P +  N +S+  L+RNG ++ +E
Sbjct: 308 TVAMVEGIGDVTFITNEGN-KTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358


>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 287 DKWMLDSGASHHMCPNRKWFTTYRSIDGGTVIMVNDNICKTVGLGTIRIQMHDGVVRTLT 346
           D W++   A  +M P  K+FTT       TV  V+  +    G G ++I+M +G  +T+ 
Sbjct: 278 DIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIR 337

Query: 347 DVRHIPDLRKNLISLG 362
           +V  +P L +N++S G
Sbjct: 338 NVIFVPGLNRNVLSFG 353

Top