BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g3980.1
(560 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 120 8e-29
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 71 2e-13
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 71 2e-12
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 71 2e-12
AT3G21000.1 | Gag-Pol-related retrotransposon family protein | C... 47 4e-05
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 16/295 (5%)
Query: 160 LVKLDRFDDTNFTRWQDKLKFLLTVLKVFYILDPTLKSIPEPSEEDTNELKDERKKREG- 218
++K+ RFD ++ W +++ L LK+ Y+L SI +TN + R G
Sbjct: 192 VIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGK 251
Query: 219 ----DELICRGHILNALSDRLYDLYTDT-RSAKDIWNALEFKYKAEEEGTKKFLISKYFD 273
D+ +C H++N+LSD LY Y+ + AK++W+ L++ Y+ +E +K+ + KY +
Sbjct: 252 KWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIE 311
Query: 274 FKMFDDKPILPQIHELQIIVNKMRVVKIDIPESFQVGAIIAKLPPSWKNYRNMILHKSED 333
F+M +++PIL Q+ I + + + + E+F V II+K PPSW+ + ++ + E
Sbjct: 312 FRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEE-EY 370
Query: 334 FTLEEIQKHLRIEEE-SRSRDNKVENDIGISKANMVKKSNHPTKNKEKISGLKRVQGKFK 392
+ + + ++ EEE R+ V + M + + T ++ G + V K K
Sbjct: 371 LPVWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHR----GSQSVGWKRK 426
Query: 393 KTFQAIKKLKGCFVCGKVGHYARDC---KFRKEQMQEANAINEEIVA-VLSEINA 443
+ + + + C CG+ GH A+ C K + ++N IN + A V SE A
Sbjct: 427 EPERDERVIIVCDNCGRKGHLAKHCWGSKSDERASGKSNRINSSVAAPVESETQA 481
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 26 IYLLLYVDDMLIASRSMVEIDKLKSQLSQEFEMKDMGAAKKILGMEIKRERLSKKLYLNQ 85
+YLLLYVDD+L+ S ++ L QLS F MKD+G LG++IK L+L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTH--PSGLFLSQ 58
Query: 86 KGYIERVVSRFGMQNAKAVSTPLAPHFRLSGRQSPTTTVEKDHMDRVPYASAVGSLMY 143
Y E++++ GM + K +STPL L S +T D D + S VG+L Y
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLP----LKLNSSVSTAKYPDPSD---FRSIVGALQY 109
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 1 MLKHGFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMVEIDKLKSQLSQEFEMKD 60
++ GF +S D Y K+ F+ +L+YVDD++I S + +D+LKSQL F+++D
Sbjct: 254 LIGFGFVQSHSDH-TYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312
Query: 61 MGAAKKILGMEIKRERLSKKLYLNQKGYIERVVSRFGMQNAKAVSTPLAPHFRLSGRQSP 120
+G K LG+EI R + + + Q+ Y ++ G+ K S P+ P S
Sbjct: 313 LGPLKYFLGLEIARS--AAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG- 369
Query: 121 TTTVEKDHMDRVPYASAVGSLMY 143
D +D Y +G LMY
Sbjct: 370 -----GDFVDAKAYRRLIGRLMY 387
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 1 MLKHGFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMVEIDKLKSQLSQEFEMKD 60
++ GF +S D Y K+ F+ +L+YVDD++I S + +D+LKSQL F+++D
Sbjct: 254 LIGFGFVQSHSDH-TYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312
Query: 61 MGAAKKILGMEIKRERLSKKLYLNQKGYIERVVSRFGMQNAKAVSTPLAPHFRLSGRQSP 120
+G K LG+EI R + + + Q+ Y ++ G+ K S P+ P S
Sbjct: 313 LGPLKYFLGLEIARS--AAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG- 369
Query: 121 TTTVEKDHMDRVPYASAVGSLMY 143
D +D Y +G LMY
Sbjct: 370 -----GDFVDAKAYRRLIGRLMY 387
>AT3G21000.1 | Gag-Pol-related retrotransposon family protein |
Chr3:7363921-7365138 FORWARD LENGTH=405 | 201606
Length = 405
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 373 HPTKNKEKISGLKRVQGKFKKTFQAIKKLKGCFVCGKVGHYARDCKFR----KEQMQEAN 428
H + +E I GL K K K C +C K H DCKFR KE+ ++
Sbjct: 205 HESSTEEAIFGL------LKDLRLKSKSEKWCGLCYKNNHNQEDCKFRIHTDKEEKEDEI 258
Query: 429 AINEEIVAVLSEINAIHGKVSGWWYDTCATVHVSYDKAVFKTYDSINDGQEIQMGNEVRS 488
++ + V + A W A ++++ F T D + V
Sbjct: 259 VVDYRLETV-PNLGAKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLL 317
Query: 489 KVLGKGNVELVFTSGKKITLSNVLHVPDMNRNLVS-GDLLRKPGIKSVYESGKLILSKSG 547
V GKG+V++ GKK T+ NV+ VP +NRN++S G ++ K S G+ I+ G
Sbjct: 318 -VEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSISTGMQGECIVCDRG 376