BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4000.1
(206 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 56 3e-09
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 50 3e-07
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 5e-07
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 44 5e-05
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 38/234 (16%)
Query: 4 GLATVSKIGRRIIYINQECKMCNTQEAKTHTHLFGTCTCLASL----------VSLTNNH 53
LAT + RR I + +C C QE +T HLF C + + T
Sbjct: 38 ALATGDNLKRRHIRNHPQCHRC-CQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGIT 96
Query: 54 VENIKNLLNRAEEAN---EIWYLYTYLFWQWWKRRNEVHFSNKRIDLPHIWWLTKMELQR 110
+E LL + AN +++ L ++ W+ WK RN++ F K I W ++ R
Sbjct: 97 METKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSIS-----WQNTLQRAR 151
Query: 111 NH----NIIYLFPNDVNMQVH------------QWKPPSQGYVKINVDGAFRAEGGAATA 154
N + +N QVH +W+ P ++K N DGAF + A A
Sbjct: 152 NDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKA 211
Query: 155 --VMKNSDGEVTATSK-IRFPPISALHSEMRAFRLGLEMAKDGNLYDIQIEGDS 205
+M++ +G + + I +L SE +A + ++ A + EGDS
Sbjct: 212 GWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDS 265
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 1 MHEGLATVSKIGRRIIYINQECKMCNTQEAKTHTHLFGTCTCL--------ASLVS---L 49
+ + LAT ++ R + I+ C C+ +E ++ H TC +SL+ +
Sbjct: 179 LSQALATTERLTTRGMRIDPSCPRCH-RENESINHALFTCPFATMAWRLSDSSLIRNQLM 237
Query: 50 TNNHVENIKNLLNRAEEANEIWY---LYTYLFWQWWKRRNEVHFSNKRIDLPHIWWLTKM 106
+N+ ENI N+LN ++ + L +L W+ WK RN V F+ R K
Sbjct: 238 SNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKA 297
Query: 107 ELQ------RNHNIIYLFPNDVNMQVHQWKPPSQGYVKINVDGAFRAEGGAATA--VMKN 158
E ++H + +W+ P YVK N D F + AT +++N
Sbjct: 298 ETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRN 357
Query: 159 SDGEVTATSKIRFPPIS-ALHSEMRAFRLGLEMAKDGNLYDIQIEGD 204
G + ++ S L +E +A L+ + +EGD
Sbjct: 358 HYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGD 404
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 33/223 (14%)
Query: 11 IGRRIIYINQECKMCNTQEAKTHTHLFGTCTCLASLV------------SLTNNHVENIK 58
+ R ++ C C +T HL C C A LV T++ N+
Sbjct: 1 MAYRHLFREASCVRC-PDSRETVNHLLFKC-CFARLVWAISPIPAYPEGEWTDSLYANLY 58
Query: 59 NLLNRAEEA---NEIWYLYTYLFWQWWKRRNEVHFSNKRIDLPHIW---------WLTKM 106
+LN E +I L +L W+ WK RNE+ F K D P + W T+
Sbjct: 59 WVLNLEVEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRR 118
Query: 107 ELQRNHNIIYLFPNDVNMQVHQWKPPSQGYVKINVDGAFRAEGGAATA--VMKNSDGEVT 164
EL+ + + + N+ V QWK P +VK N D ++ E +++N G V
Sbjct: 119 ELEGKASGPQV---ERNLSV-QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVL 174
Query: 165 ATSKIRFPPI-SALHSEMRAFRLGLEMAKDGNLYDIQIEGDSN 206
P + L +E+ A R + N I E D+
Sbjct: 175 WMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQ 217
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 33/232 (14%)
Query: 4 GLATVSKIGRRIIYINQECKMCNTQEAKTHTHLFGTCTCLASLVSLTN-----------N 52
LAT +++ R I + C+ C +E H H+ C S+ N +
Sbjct: 57 ALATNTRLRSRNIDADPICQRCCIEEETIH-HIMFNCPYTQSVWRSANIIIGNQWGPPSS 115
Query: 53 HVENIKNL--LNRAEEANEI-WYLYTYLFWQWWKRRNEVHFSNKRIDLPH---------I 100
+N+ L L++ + N + +L ++ W+ WK RN F K +
Sbjct: 116 FEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDAT 175
Query: 101 WWLTKMELQRNHNIIYLFPNDVNMQ---VHQWKPPSQGYVKINVDGAFRAEGGAATA--- 154
WL E N N+ ++ N + QW PP +G+VK N D + +G T
Sbjct: 176 EWLNANETTENTNV-HVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGY-TQGSPYTRSGW 233
Query: 155 VMKNSDGEVTATSKIRF-PPISALHSEMRAFRLGLEMAKDGNLYDIQIEGDS 205
++ +G + + +LH+E F L++ L + E DS
Sbjct: 234 TIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDS 285