BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4020.1
(225 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 59 4e-11
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 45 3e-05
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 45 3e-05
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 44 8e-05
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 58.9 bits (141), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 59 INGNLYGAFSASRGLRKGCPLSPNLFILTSQSLSLLIHHYESHCIFAGYKLNNYCPSITH 118
ING G + SRGLR+G PLSP LFIL ++ LS L + G +++N P I H
Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73
Query: 119 LLIADD 124
LL ADD
Sbjct: 74 LLFADD 79
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 116 ITHLLIADDLLLFGEENLNNLNAILRLMSEYVEFFGQAVNFNKSSIFFGSGVPILMQSQY 175
ITHL ADDLL+F + +++ IL++ ++ +F G ++ KS+I+ +GV ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 176 VTLLQTPKMTSQTKYLGSLILKKGNIIESYTWLLYKFRKSLDGW 219
+ +YLG +L K Y L+ K R + W
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKW 110
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 116 ITHLLIADDLLLFGEENLNNLNAILRLMSEYVEFFGQAVNFNKSSIFFGSGVPILMQSQY 175
ITHL ADDLL+F + +++ IL++ ++ +F G ++ KS+I+ +GV ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 176 VTLLQTPKMTSQTKYLGSLILKKGNIIESYTWLLYKFRKSLDGW 219
+ +YLG +L K Y L+ K R + W
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKW 110
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 116 ITHLLIADDLLLFGEENLNNLNAILRLMSEYVEFFGQAVNFNKSSIFFGSGVPILMQSQY 175
ITHL ADDLL+F + +++ IL++ ++ +F G ++ KS+I+ +GV ++
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYM-AGVKDNDKADI 66
Query: 176 VTLLQTPKMTSQTKYLGSLILKKGNIIESYTWLLYKFRKSLDGW 219
+ +YLG +L K Y L+ K R + W
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKW 110