BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4130.1
(557 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWAR... 54 7e-08
AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN... 46 4e-06
>AT4G13320.1 | hypothetical protein | Chr4:7753436-7754086 FORWARD
LENGTH=216 | 201606
Length = 216
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 446 IFRTRCSSHGRLCNVIIDGGSCENFVSKEMVSKLNLAMQPHPNPYEVVWFKKGGEVKVTH 505
+FRT+C + C +++ GG+ N +SK +V +L L V+ ++ +V
Sbjct: 98 VFRTQCVINDEACRLVLYGGN--NIISKGLVKQLKLKTLKKYPSVRVMATRREDKV-AEE 154
Query: 506 QCRVPFSIGKSYSDEVLCDVIGM--EACHLLLGRPWQYDNKTVHLGEKN 552
CRVP SIG Y D+V C V+ M E LL G PW Y + H G +
Sbjct: 155 TCRVPVSIGDFYKDKVTCYVVNMEEEEDQLLFGGPWLYRVQATHNGRDD 203
>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
LENGTH=110 | 201606
Length = 110
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 168 ASSWWQQLQMTRMQTGKERVQTWSKMQRLIRSQFLPLNYEGMLFQQYQSIQQ 219
A+SWWQQ Q TR + GK +++W K++ + FLP +Y + + ++++Q
Sbjct: 2 AASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHYTSSVSNRLKNVKQ 53