BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4260.1
(574 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33980.1 | Smg-4/UPF3 family protein | Chr1:12351719-12354401... 299 4e-95
AT1G33980.2 | Smg-4/UPF3 family protein | Chr1:12351719-12354401... 292 2e-92
>AT1G33980.1 | Smg-4/UPF3 family protein | Chr1:12351719-12354401
FORWARD LENGTH=482 | 201606
Length = 482
Score = 299 bits (766), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 195/441 (44%), Positives = 255/441 (57%), Gaps = 72/441 (16%)
Query: 1 MKDQFDRTKVVLRHLPPAFTKTALIEQIDGRFAGRYNWVSFRPGKTSHKRLQYSRAYLDF 60
MK+ + KVV+RHLPP+ +++ L+ QID RFA RYNWVSFRPGK+S+K +YSRAY+ F
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPDDVFEFAEFFNGRTFVYDKGSQFKTIVEYAPSQRVPKQRSKKDGREGTIYKDPEYLE 120
K P+DV+EFA FFNG FV +KG+QFK IVEYAPSQRVPK KKD REG+I KDP+YLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120
Query: 121 FLERLAKPVEYLPSAEIQLERREAERAGAAKEAPIVTPLMEFIRQKRAA----------- 169
FL+ +A+PVE LPSAEIQLERREAE++GA+K APIVTPLMEFIRQKRA
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180
Query: 170 --------KSVSQYVLRDGTKSSTGK---EKPTYILVPRRENQQLSDKSISV--ASASGT 216
S ++ R ++S K EK + VPR+ +S +++SG
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTADVSSSKPDYRQSNSSGK 240
Query: 217 ETAQDE----IGTSGPA-----DPTKKKILLLKGKERESTHASEGISPQLSVTPPMKNSV 267
E +E I +S P D KKKILLL+ K+R++ Q T +NS
Sbjct: 241 ELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRNST 300
Query: 268 GTSNFKQSQRRESSGRMVKSILSNKDA---------QTGQQILSSNFDKDKRPPRSTNIY 318
+ +Q+Q+ + GR++K IL D+ Q+ Q++ S + KRP R N
Sbjct: 301 DS---RQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPAN-- 355
Query: 319 SASGVSRATYNSDFDSKRGIDDKTVGNDDRSFGFSTDKQERRTRNKDRPDRGVWTLRRSD 378
+RA G D + G ++KQERRTRNKDRPDR +W RR D
Sbjct: 356 -----TRA-----------------GKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-D 392
Query: 379 GSHASDESLSDIREEGTMVTR 399
GS D+ LS G + R
Sbjct: 393 GSE--DQPLSSAGNNGEVKDR 411
>AT1G33980.2 | Smg-4/UPF3 family protein | Chr1:12351719-12354401
FORWARD LENGTH=484 | 201606
Length = 484
Score = 292 bits (748), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/443 (43%), Positives = 254/443 (57%), Gaps = 74/443 (16%)
Query: 1 MKDQFDRTKVVLRHLPPAFTKTALIEQIDGRFAGRYNWVSFRPGKT--SHKRLQYSRAYL 58
MK+ + KVV+RHLPP+ +++ L+ QID RFA RYNWVSFRPGK+ +K +YSRAY+
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 59 DFKKPDDVFEFAEFFNGRTFVYDKGSQFKTIVEYAPSQRVPKQRSKKDGREGTIYKDPEY 118
FK P+DV+EFA FFNG FV +KG+QFK IVEYAPSQRVPK KKD REG+I KDP+Y
Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120
Query: 119 LEFLERLAKPVEYLPSAEIQLERREAERAGAAKEAPIVTPLMEFIRQKRAA--------- 169
LEFL+ +A+PVE LPSAEIQLERREAE++GA+K APIVTPLMEFIRQKRA
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180
Query: 170 ----------KSVSQYVLRDGTKSSTGK---EKPTYILVPRRENQQLSDKSISV--ASAS 214
S ++ R ++S K EK + VPR+ +S +++S
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTADVSSSKPDYRQSNSS 240
Query: 215 GTETAQDE----IGTSGPA-----DPTKKKILLLKGKERESTHASEGISPQLSVTPPMKN 265
G E +E I +S P D KKKILLL+ K+R++ Q T +N
Sbjct: 241 GKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRN 300
Query: 266 SVGTSNFKQSQRRESSGRMVKSILSNKDA---------QTGQQILSSNFDKDKRPPRSTN 316
S + +Q+Q+ + GR++K IL D+ Q+ Q++ S + KRP R N
Sbjct: 301 STDS---RQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPAN 357
Query: 317 IYSASGVSRATYNSDFDSKRGIDDKTVGNDDRSFGFSTDKQERRTRNKDRPDRGVWTLRR 376
+RA G D + G ++KQERRTRNKDRPDR +W RR
Sbjct: 358 -------TRA-----------------GKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR 393
Query: 377 SDGSHASDESLSDIREEGTMVTR 399
DGS D+ LS G + R
Sbjct: 394 -DGSE--DQPLSSAGNNGEVKDR 413