BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4360.1
(255 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71440.1 | tubulin folding cofactor E / Pfifferling (PFI) | C... 232 4e-73
AT3G10220.1 | tubulin folding cofactor B | Chr3:3161977-3164037 ... 51 2e-07
>AT1G71440.1 | tubulin folding cofactor E / Pfifferling (PFI) |
Chr1:26921271-26924373 REVERSE LENGTH=531 | 201606
Length = 531
Score = 232 bits (592), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 109/168 (64%), Positives = 139/168 (82%), Gaps = 1/168 (0%)
Query: 23 FRINQRVHIVGDTRRIGTVKYIGPVEGYSGTWVGVDWD-DNDGKHNGSINGVNYFEAKGE 81
F I QRVH + D+RR+GTVKY+G VEGYSGTW+GVDWD D DGKHNGS+NGV YF + +
Sbjct: 10 FIIGQRVHSLNDSRRVGTVKYVGDVEGYSGTWIGVDWDQDGDGKHNGSVNGVFYFNGRSQ 69
Query: 82 KSGSFVRPEKLSCGISFLEALELRYRSDSTKEEEDEMYVLSTSNKRVAVQLVGKNKVQEK 141
S SFVR + LS GI+ L+ALELRYR+ STK+EEDEMYVLS N+RV++QL+G +K+Q+K
Sbjct: 70 SSASFVRSQNLSRGITLLQALELRYRTISTKDEEDEMYVLSAGNRRVSIQLLGGDKIQDK 129
Query: 142 LSRLEDLTGASLSYLGISSMGSPCQLNAVVPNLKELDLTGNLLSEWKD 189
LSR E+LT ASLSYLG+SS+G L +++PNLK LDLTGNL+S+W++
Sbjct: 130 LSRFEELTSASLSYLGVSSLGVSSDLGSILPNLKLLDLTGNLISDWEE 177
>AT3G10220.1 | tubulin folding cofactor B | Chr3:3161977-3164037
FORWARD LENGTH=243 | 201606
Length = 243
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 7 QHPISASKGDQKSKL-----GFRINQRVHIVGDTRRIGTVKYIGPVEGYS-GTWVGVDWD 60
Q+P++A +++ + ++ R + +R G VKY+G E G WVG+ +D
Sbjct: 138 QNPVAAEAKTKENYMEDLCANIKVGDRCQVEPGEKR-GMVKYVGRAESLGPGYWVGIQYD 196
Query: 61 DNDGKHNGSINGVNYFEAKGEKSGSFVRPEKLSCG 95
+ GKH+G + G +FE G VRP+K+ G
Sbjct: 197 EPLGKHDGMVKGTRFFECP-RLQGGMVRPDKVKVG 230