BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g4360.1
         (255 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71440.1 | tubulin folding cofactor E / Pfifferling (PFI) | C...   232   4e-73
AT3G10220.1 | tubulin folding cofactor B | Chr3:3161977-3164037 ...    51   2e-07

>AT1G71440.1 | tubulin folding cofactor E / Pfifferling (PFI) |
           Chr1:26921271-26924373 REVERSE LENGTH=531 | 201606
          Length = 531

 Score =  232 bits (592), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 109/168 (64%), Positives = 139/168 (82%), Gaps = 1/168 (0%)

Query: 23  FRINQRVHIVGDTRRIGTVKYIGPVEGYSGTWVGVDWD-DNDGKHNGSINGVNYFEAKGE 81
           F I QRVH + D+RR+GTVKY+G VEGYSGTW+GVDWD D DGKHNGS+NGV YF  + +
Sbjct: 10  FIIGQRVHSLNDSRRVGTVKYVGDVEGYSGTWIGVDWDQDGDGKHNGSVNGVFYFNGRSQ 69

Query: 82  KSGSFVRPEKLSCGISFLEALELRYRSDSTKEEEDEMYVLSTSNKRVAVQLVGKNKVQEK 141
            S SFVR + LS GI+ L+ALELRYR+ STK+EEDEMYVLS  N+RV++QL+G +K+Q+K
Sbjct: 70  SSASFVRSQNLSRGITLLQALELRYRTISTKDEEDEMYVLSAGNRRVSIQLLGGDKIQDK 129

Query: 142 LSRLEDLTGASLSYLGISSMGSPCQLNAVVPNLKELDLTGNLLSEWKD 189
           LSR E+LT ASLSYLG+SS+G    L +++PNLK LDLTGNL+S+W++
Sbjct: 130 LSRFEELTSASLSYLGVSSLGVSSDLGSILPNLKLLDLTGNLISDWEE 177


>AT3G10220.1 | tubulin folding cofactor B | Chr3:3161977-3164037
           FORWARD LENGTH=243 | 201606
          Length = 243

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 7   QHPISASKGDQKSKL-----GFRINQRVHIVGDTRRIGTVKYIGPVEGYS-GTWVGVDWD 60
           Q+P++A    +++ +       ++  R  +    +R G VKY+G  E    G WVG+ +D
Sbjct: 138 QNPVAAEAKTKENYMEDLCANIKVGDRCQVEPGEKR-GMVKYVGRAESLGPGYWVGIQYD 196

Query: 61  DNDGKHNGSINGVNYFEAKGEKSGSFVRPEKLSCG 95
           +  GKH+G + G  +FE      G  VRP+K+  G
Sbjct: 197 EPLGKHDGMVKGTRFFECP-RLQGGMVRPDKVKVG 230


Top