BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4390.1
(813 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33680.1 | KH domain-containing protein | Chr1:12204056-12208... 360 e-112
AT4G10070.1 | KH domain-containing protein | Chr4:6295803-629975... 321 2e-98
AT1G51580.1 | RNA-binding KH domain-containing protein | Chr1:19... 63 8e-10
AT3G04610.4 | RNA-binding KH domain-containing protein | Chr3:12... 59 2e-08
AT3G04610.3 | RNA-binding KH domain-containing protein | Chr3:12... 59 2e-08
>AT1G33680.1 | KH domain-containing protein | Chr1:12204056-12208282
FORWARD LENGTH=763 | 201606
Length = 763
Score = 360 bits (923), Expect = e-112, Method: Compositional matrix adjust.
Identities = 328/865 (37%), Positives = 429/865 (49%), Gaps = 186/865 (21%)
Query: 1 MAEEEVVAVAAGGVEAGADVSPVQ-FDHKRKLEDLEPRENEDEVNAEPQAVPTSEGFSVD 59
MAEEEV+A+ PVQ DHKRKLE+LE E+ + A SVD
Sbjct: 1 MAEEEVIAI------------PVQPSDHKRKLENLE-----SEILEQQHAGSIDNDVSVD 43
Query: 60 LNADSNDVDNSVPDAKRPRLDEDS--------------DVPAAENGHQ-----------G 94
D N D P KRP+LD+++ DV + E G + G
Sbjct: 44 --DDKNASDYCQP--KRPKLDDEAVDGLGIGGTVENSGDVESKEEGTEKPIAQSDENQDG 99
Query: 95 EKLDEKPEDKLD-----EKLEEVLEGKTEEKLDEQLVENQKEQAEKDDQVKNAGNLSEAK 149
L EK ++ +D K+E+ + + + + ++V +Q E+ +V +G+ +E +
Sbjct: 100 NPLIEKVQETIDAEESDNKMEDNGKPEDNQLVTPEVVTSQDVSVEESKEVNISGSQNEGE 159
Query: 150 ---------VGEENAEKPSVDHQETGPAADGQQSLGGDFQQPTEEVP-EQRGDLSS---- 195
V ++ E S + + + + + GG+ ++ V ++ GD S
Sbjct: 160 DDSKETNDVVAQKEVENGSKEVTDCDSQKEDEANAGGESKEVNGSVSHDEIGDESKEVNG 219
Query: 196 -AQHQSQSEEETMSRKMEVPNNKVGVLIGKAGDTIRFLQYNSGAKIQITRDAEADRYSST 254
+ H+ + ++ +R+++VP++KVG LIGK G+ +R+LQ NSGAKIQI RDAEAD S+
Sbjct: 220 GSTHKEVDDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSAL 279
Query: 255 RPVELIGSLENINKAEKLIKDVIAEADAGGSPSLVARGFGTAPPSGAAEQLLIQVPNEKV 314
RPVE+IG++ I KAEKLI VIAE +AGG P+L ARG EQ+ I+VP++KV
Sbjct: 280 RPVEIIGTVSCIEKAEKLINAVIAEVEAGGVPALAARGV--------PEQMEIKVPSDKV 331
Query: 315 GLIIGKGGDTIKNLQTRSGARIQLIPQHLPEGDQSKERTVRVSGDKKQIEVAREMIKDVM 374
G+IIG+GG+TIKN+QT+S ARIQLIPQ+ EGD SKERTVR+SGDK+QI++A +IKDVM
Sbjct: 332 GVIIGRGGETIKNMQTKSRARIQLIPQN--EGDASKERTVRISGDKRQIDIATALIKDVM 389
Query: 375 DQQPVRASPLSGG-NQQGFRPRGPTTGPAQWGGSRSTSTPRGSSYDYPQRGP-PSQNPHY 432
Q R SP SGG NQQ ++PRGP GP QW GSR P Y+Y GP PSQ H+
Sbjct: 390 YQDG-RPSPYSGGFNQQAYQPRGP-GGPPQW-GSRGPHGPHSMPYNYHHGGPYPSQGSHF 446
Query: 433 PPPSYGGYPSQQSGPRGGNYNSSWDHHRHPGTQPHSSQGGSGYDYYGQGQGGNHVTDHPP 492
PP+ GGYP Q PR G Y S W+ R P + P YDYYG+ QGG
Sbjct: 447 RPPNSGGYPPQHMPPRSG-YGSGWE-QRPPHSGP--------YDYYGR-QGGQ------- 488
Query: 493 SGPASNAGPVHGSGPSSQGNYYGGHPQGGPEYGPPPSYQQTAPPQQQGYGPGYEDPKYAN 552
N GPV P +G SY Q QQ YG Y+ P Y N
Sbjct: 489 -----NPGPV-------------------PSHG--ASYSQAG--AQQTYGQMYDQPHYDN 520
Query: 553 ----------------QPAVYGGHGNSQPGGPYSAHQPGNPQPGYNQQ---------PYG 587
P+ G H QP PY G+ + GY PY
Sbjct: 521 PPMHQSYGGYGGSQQGYPSAGGQHQMQQPSRPYGMQ--GSAEQGYGPPRPAAPPGDVPYQ 578
Query: 588 N---KAPSYGMPPQGGPASQTYGGMTRTGQPAEMPPYQGGPTYGSNMPAQQ--GYPYGGP 642
APSYG PA+ +YG P P+YGSNM QQ GY P
Sbjct: 579 GPTPAAPSYG----STPAAASYGSTPAAPSYGSTP---AAPSYGSNMAQQQQYGYASSAP 631
Query: 643 TQQSYPPYGSAPATANDGYSQPLPNPASGYPPQQGAHSGYGQQP--GVQPTPGYAQGGGQ 700
TQQ+YP Y S A +DGY+ P P A+ +G QP GVQ T G G GQ
Sbjct: 632 TQQTYPSYSS--AAPSDGYNGTQP------PAVAPAYEQHGAQPASGVQQTSG---GYGQ 680
Query: 701 ---SAGYGPYPSAQPGYTEQPVPTSAGYGYQGIADPGYNNAPTSGYGAPPGGQAGYGQPV 757
+ GY YPS QP Y P ++ YGY G P Y S Y AP GQ Y Q
Sbjct: 681 VPPTGGYSSYPSTQPAYGNTPAQSNGNYGYIGSQYPSYGGGNASAYAAPT-GQTAYSQTA 739
Query: 758 PNQTGYEQPIPQPGGAAYSNAPAAA 782
P Q GYEQ Q G Y+ AP A
Sbjct: 740 PPQAGYEQSATQSAG--YAAAPGTA 762
>AT4G10070.1 | KH domain-containing protein | Chr4:6295803-6299759
REVERSE LENGTH=685 | 201606
Length = 685
Score = 321 bits (823), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 285/703 (40%), Positives = 363/703 (51%), Gaps = 115/703 (16%)
Query: 1 MAEEEVVAVAAGGVEAGADVSPVQFDHKRKLEDLEPRENEDEVNAEPQAVPTSEGFSVDL 60
M EE+ V ++ V D KRKL+++E + ++
Sbjct: 1 MTEEDFVVISTPPV-----------DLKRKLDEVE--------------------LNGNI 29
Query: 61 NADSNDVDNSVPDAKRPRLDEDSD--VPAAENGHQGEKLDEKPEDKLDEKLEEV-----L 113
DSN +S AKR +L++++ + G ++ K E++L E EE L
Sbjct: 30 VDDSNQTSDSS-QAKRAKLEDEAQDGLDYGNTQENGSSMEVKEEEQLQEPKEENQDSVPL 88
Query: 114 EGKTEEKLDEQLVENQKEQAEK--DDQVKNAGNLSEAKVGEENAEKPSVDHQETGPAADG 171
+ ++ + EN+ ++ DDQVK N E V ++ DG
Sbjct: 89 VEEVQDPIHADESENKICSVDQPTDDQVKPEDNQQGCIEDVNGGEHQKVIDDDSKEVNDG 148
Query: 172 QQSLGGDFQQPTEEVPEQRGDLSSAQHQSQSEEETMSRKMEVPNNKVGVLIGKAGDTIRF 231
G EE E G+ S + ++ +R+++VP++KVGVLIGK G+TIR+
Sbjct: 149 SSQENG-----KEENKEVDGEKSQKEVDG---TQSTTRRIDVPSSKVGVLIGKGGETIRY 200
Query: 232 LQYNSGAKIQITRDAEADRYSSTRPVELIGSLENINKAEKLIKDVIAEADAGGSPSLVAR 291
LQ+NSGAKIQI RD+EAD S+ RPVE+IGS+ I AEKLI VIAEA+AGGSP+LVAR
Sbjct: 201 LQFNSGAKIQILRDSEADPSSALRPVEIIGSVACIESAEKLISAVIAEAEAGGSPALVAR 260
Query: 292 GFGTAPPSGAAEQLLIQVPNEKVGLIIGKGGDTIKNLQTRSGARIQLIPQHLPEGDQSKE 351
G + G EQ+ I+VPN+KVGLIIG+GG+TIKN+QTRSGAR QLIPQH EGD KE
Sbjct: 261 GHPSTHAIGIPEQIEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHA-EGDGLKE 319
Query: 352 RTVRVSGDKKQIEVAREMIKDVMDQQPVRASPLSGG-NQQGFRPRGPTTGPAQWGGSRST 410
RTVR+SGDK QI++A +MIKDVM+Q R S SGG NQ +RP+GP GP QW GSR
Sbjct: 320 RTVRISGDKMQIDIATDMIKDVMNQN-ARPSSYSGGYNQPAYRPQGP-GGPPQW-GSRGP 376
Query: 411 STPRGSSYDYPQRGP-PSQNPHYPPPSYGGYPSQQSGPRGGNYNSSWDHHRHPGTQPHSS 469
P YDY RGP SQ +Y P +GGYP Q PRGG Y + WD R P + P
Sbjct: 377 HAPH--PYDYHPRGPYSSQGSYYNSPGFGGYPPQHMPPRGG-YGTDWD-QRPPYSGP--- 429
Query: 470 QGGSGYDYYGQGQGGNHVTDHPPSGPASNAGPVHGSGPSSQGNYYGGHPQGGPEYGPPPS 529
Y+YY G+ G P P G P SQ +Y G GPEYG
Sbjct: 430 -----YNYY--GRQGAQSAGPVPPPSGPVPSPAFGGPPLSQVSYGYGQSH-GPEYGHAAP 481
Query: 530 YQQTAPPQQQGYGPGYEDPKYANQPAVYGGHGNSQP------GGPYSAHQPGNPQPGYNQ 583
Y QT QQ YG YE PKY + P + +G S P G Y QPG
Sbjct: 482 YSQTG--YQQTYGQTYEQPKYDSNPPMQPPYGGSYPPAGGGQSGYYQMQQPG-------V 532
Query: 584 QPYGNKAPSYGMPPQGGPASQTYGGMTRTGQPAEMP-----PYQG----GPTYGS-NM-P 632
+PYG Q GP Q YG QPA PYQG P+YGS NM P
Sbjct: 533 RPYGM---------QQGPVQQGYG----PPQPAAAASSGDVPYQGATPAAPSYGSTNMAP 579
Query: 633 AQQGYPY---GGPT-QQSYPPYGSAPATANDGYSQPLPNPASG 671
QQ Y Y GP QQ+YP Y SAP + D Y+ PA+G
Sbjct: 580 QQQQYGYTSSDGPVQQQTYPSYSSAPPS--DAYNNGTQTPATG 620
>AT1G51580.1 | RNA-binding KH domain-containing protein |
Chr1:19125612-19128102 FORWARD LENGTH=621 | 201606
Length = 621
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 19/165 (11%)
Query: 204 EETMSRKMEVPNNKVGVLIGKAGDTIRFLQYNSGAKIQI---TRDAEADRYSSTRPVELI 260
EE ++ ++ P +KVG LIGK G +R LQ SGA I++ T D+E + +I
Sbjct: 273 EEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEER-------IIVI 325
Query: 261 GSLENINKAEKLIKDVIAEADAGGSPSLVARGFGTAPPSGAAEQLLIQVPNEKVGLIIGK 320
+ EN+ + L +D + +V GF P + +LL+ P +G ++GK
Sbjct: 326 SARENLERRHSLAQDGVMRVHN----RIVEIGF--EPSAAVVARLLVHSP--YIGRLLGK 377
Query: 321 GGDTIKNLQTRSGARIQLIPQHLPEGDQSK-ERTVRVSGDKKQIE 364
GG I ++ +GA I++ + +S+ + V+V G+ K ++
Sbjct: 378 GGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQ 422
>AT3G04610.4 | RNA-binding KH domain-containing protein |
Chr3:1250762-1254272 REVERSE LENGTH=553 | 201606
Length = 553
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 158/409 (38%), Gaps = 74/409 (18%)
Query: 205 ETMSRKMEVPNNKVGVLIGKAGDTIRFLQYNSGAKIQITRDAEADRYSSTRPVELIG--- 261
ET+ R M VP KVG +IG+ GD I+ + + A+I+I ++ R V + G
Sbjct: 162 ETVFR-MLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPG---TTERAVMVSGKEE 217
Query: 262 -------SLENINKAEKLIKDVIAEADAGGSPSLVARGFGTAPPSGAAEQLLIQVPNEKV 314
S++ + + I D + + +A +P PPS + +LL VP +
Sbjct: 218 PESSLPPSMDGLLRVHMRIVDGL-DGEASQAP----------PPSKVSTRLL--VPASQA 264
Query: 315 GLIIGKGGDTIKNLQTRSGARIQLI-PQHLPEGDQSKERTVRVSGDKKQIEVAREMIKDV 373
G +IGK G T+K +Q S ++++ + LP +R V V G+ + A E+I
Sbjct: 265 GSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASH 324
Query: 374 MDQQPVRASPLSGGNQQGFRP-------------------RGPTTGPAQWGGSRSTSTPR 414
+ + V S + Q +P P+ G +G +
Sbjct: 325 LRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQP 384
Query: 415 GSSYD--YP---QRGPPSQN-PHYPPPSYGGYPSQQSGPRGGNYNSS--------WDHHR 460
+D YP R PP + PH +YG P P + +S+ +
Sbjct: 385 PPRHDSYYPPPEMRQPPMEKQPHQGISAYGREP-----PMNVHVSSAPPMVAQQVTQQMQ 439
Query: 461 HPGTQPHSSQGGSGYDY-YGQGQGGNHVTDHPPSG-PASNAGPVHGSGPSSQGNYYGGHP 518
P + + G SG + Y + G VT G P V G+G Q
Sbjct: 440 IPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQN 499
Query: 519 QGGPEYGPPPSYQQTAPPQQQGYGPGYEDPKYANQPAVYGGHGNSQPGG 567
P P+ QT P+QQGY P YA +VY + PGG
Sbjct: 500 FMAEAGAPAPAQPQTVAPEQQGYNP------YATHGSVYAAAPTNPPGG 542
>AT3G04610.3 | RNA-binding KH domain-containing protein |
Chr3:1250762-1254272 REVERSE LENGTH=553 | 201606
Length = 553
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 158/409 (38%), Gaps = 74/409 (18%)
Query: 205 ETMSRKMEVPNNKVGVLIGKAGDTIRFLQYNSGAKIQITRDAEADRYSSTRPVELIG--- 261
ET+ R M VP KVG +IG+ GD I+ + + A+I+I ++ R V + G
Sbjct: 162 ETVFR-MLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPG---TTERAVMVSGKEE 217
Query: 262 -------SLENINKAEKLIKDVIAEADAGGSPSLVARGFGTAPPSGAAEQLLIQVPNEKV 314
S++ + + I D + + +A +P PPS + +LL VP +
Sbjct: 218 PESSLPPSMDGLLRVHMRIVDGL-DGEASQAP----------PPSKVSTRLL--VPASQA 264
Query: 315 GLIIGKGGDTIKNLQTRSGARIQLI-PQHLPEGDQSKERTVRVSGDKKQIEVAREMIKDV 373
G +IGK G T+K +Q S ++++ + LP +R V V G+ + A E+I
Sbjct: 265 GSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASH 324
Query: 374 MDQQPVRASPLSGGNQQGFRP-------------------RGPTTGPAQWGGSRSTSTPR 414
+ + V S + Q +P P+ G +G +
Sbjct: 325 LRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQP 384
Query: 415 GSSYD--YP---QRGPPSQN-PHYPPPSYGGYPSQQSGPRGGNYNSS--------WDHHR 460
+D YP R PP + PH +YG P P + +S+ +
Sbjct: 385 PPRHDSYYPPPEMRQPPMEKQPHQGISAYGREP-----PMNVHVSSAPPMVAQQVTQQMQ 439
Query: 461 HPGTQPHSSQGGSGYDY-YGQGQGGNHVTDHPPSG-PASNAGPVHGSGPSSQGNYYGGHP 518
P + + G SG + Y + G VT G P V G+G Q
Sbjct: 440 IPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQN 499
Query: 519 QGGPEYGPPPSYQQTAPPQQQGYGPGYEDPKYANQPAVYGGHGNSQPGG 567
P P+ QT P+QQGY P YA +VY + PGG
Sbjct: 500 FMAEAGAPAPAQPQTVAPEQQGYNP------YATHGSVYAAAPTNPPGG 542