BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4460.1
(195 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 44 2e-05
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 38 KGVVDRLEKAERSFWWGHAENEQKFHFINCD-IIGSPKHKGGLGIRTLQHLNEALIAKMT 96
K + +L A FWW EN++K ++ + S + GGLG R L N+AL+AK +
Sbjct: 15 KLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQS 74
Query: 97 WRIL 100
+RI+
Sbjct: 75 FRII 78