BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000058.1_g4460.1
         (195 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase...    44   2e-05

>ATMG00310.1 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein | ChrM:90883-91347
           REVERSE LENGTH=154 | 201606
          Length = 154

 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 38  KGVVDRLEKAERSFWWGHAENEQKFHFINCD-IIGSPKHKGGLGIRTLQHLNEALIAKMT 96
           K +  +L  A   FWW   EN++K  ++    +  S +  GGLG R L   N+AL+AK +
Sbjct: 15  KLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQS 74

Query: 97  WRIL 100
           +RI+
Sbjct: 75  FRII 78


Top