BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4480.1
(162 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44910.2 | pre-mRNA-processing protein 40A | Chr1:16975930-16... 101 2e-25
AT1G44910.1 | pre-mRNA-processing protein 40A | Chr1:16975930-16... 101 2e-25
AT3G19670.4 | pre-mRNA-processing protein 40B | Chr3:6828242-683... 89 4e-21
AT3G19670.3 | pre-mRNA-processing protein 40B | Chr3:6828242-683... 89 7e-21
AT3G19670.2 | pre-mRNA-processing protein 40B | Chr3:6828242-683... 89 7e-21
>AT1G44910.2 | pre-mRNA-processing protein 40A |
Chr1:16975930-16982647 FORWARD LENGTH=926 | 201606
Length = 926
Score = 101 bits (252), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIEI 60
MT +ERADASTVWKEF TP+G+KYYYNKVTK+SKWTIPE+LKLAREQAQ A+ + E
Sbjct: 219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEA 278
Query: 61 G-------VASQPPASLTAPSLETPSISSSTTSGKTSSPVEVNPIAAVVNTPTVVASGSP 113
G AS +++ + PS SS+ T G +SSP++ +A V P VA +P
Sbjct: 279 GSTPLSHHAASSSDLAVSTVTSVVPSTSSALT-GHSSSPIQAG-LAVPVTRPPSVAPVTP 336
Query: 114 SVPALSS 120
+ A+S
Sbjct: 337 TSGAISD 343
>AT1G44910.1 | pre-mRNA-processing protein 40A |
Chr1:16975930-16982818 FORWARD LENGTH=958 | 201606
Length = 958
Score = 101 bits (252), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIEI 60
MT +ERADASTVWKEF TP+G+KYYYNKVTK+SKWTIPE+LKLAREQAQ A+ + E
Sbjct: 219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEA 278
Query: 61 G-------VASQPPASLTAPSLETPSISSSTTSGKTSSPVEVNPIAAVVNTPTVVASGSP 113
G AS +++ + PS SS+ T G +SSP++ +A V P VA +P
Sbjct: 279 GSTPLSHHAASSSDLAVSTVTSVVPSTSSALT-GHSSSPIQAG-LAVPVTRPPSVAPVTP 336
Query: 114 SVPALSS 120
+ A+S
Sbjct: 337 TSGAISD 343
>AT3G19670.4 | pre-mRNA-processing protein 40B |
Chr3:6828242-6836582 REVERSE LENGTH=973 | 201606
Length = 973
Score = 89.4 bits (220), Expect = 4e-21, Method: Composition-based stats.
Identities = 55/116 (47%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIE- 59
MTL ERADA T WKE ++PDGRKYYYNK+TKQS WT+PEE+K+ REQA+ A+ G E
Sbjct: 219 MTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEG 278
Query: 60 IGVASQPPASLTAPSLETPSISSSTTSGKTSSPVEVNPIAAVVNTPTVVASGSPSV 115
I AS+ S P+ S TS TS VE + + + P V S V
Sbjct: 279 IIDASEVLTRSDTASTAAPTGLPSQTS--TSEGVEKLTLTSDLKQPASVPGSSSPV 332
>AT3G19670.3 | pre-mRNA-processing protein 40B |
Chr3:6828242-6836582 REVERSE LENGTH=992 | 201606
Length = 992
Score = 89.0 bits (219), Expect = 7e-21, Method: Composition-based stats.
Identities = 55/116 (47%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIE- 59
MTL ERADA T WKE ++PDGRKYYYNK+TKQS WT+PEE+K+ REQA+ A+ G E
Sbjct: 238 MTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEG 297
Query: 60 IGVASQPPASLTAPSLETPSISSSTTSGKTSSPVEVNPIAAVVNTPTVVASGSPSV 115
I AS+ S P+ S TS TS VE + + + P V S V
Sbjct: 298 IIDASEVLTRSDTASTAAPTGLPSQTS--TSEGVEKLTLTSDLKQPASVPGSSSPV 351
>AT3G19670.2 | pre-mRNA-processing protein 40B |
Chr3:6828242-6836582 REVERSE LENGTH=992 | 201606
Length = 992
Score = 89.0 bits (219), Expect = 7e-21, Method: Composition-based stats.
Identities = 55/116 (47%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 1 MTLIERADASTVWKEFATPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKAANHGTQIE- 59
MTL ERADA T WKE ++PDGRKYYYNK+TKQS WT+PEE+K+ REQA+ A+ G E
Sbjct: 238 MTLFERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEG 297
Query: 60 IGVASQPPASLTAPSLETPSISSSTTSGKTSSPVEVNPIAAVVNTPTVVASGSPSV 115
I AS+ S P+ S TS TS VE + + + P V S V
Sbjct: 298 IIDASEVLTRSDTASTAAPTGLPSQTS--TSEGVEKLTLTSDLKQPASVPGSSSPV 351