BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4490.1
(112 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44910.2 | pre-mRNA-processing protein 40A | Chr1:16975930-16... 106 8e-28
AT1G44910.1 | pre-mRNA-processing protein 40A | Chr1:16975930-16... 106 8e-28
AT3G19670.3 | pre-mRNA-processing protein 40B | Chr3:6828242-683... 96 3e-24
AT3G19670.2 | pre-mRNA-processing protein 40B | Chr3:6828242-683... 96 3e-24
AT3G19670.1 | pre-mRNA-processing protein 40B | Chr3:6828242-683... 96 3e-24
>AT1G44910.2 | pre-mRNA-processing protein 40A |
Chr1:16975930-16982647 FORWARD LENGTH=926 | 201606
Length = 926
Score = 106 bits (264), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 21 KGTAVAGMINGTSSEEKAVDDETLTYATKQEAKVAFKTLLESANVESDWTWEQAMRVIIN 80
K +V G N + + +KA +E + YATKQEAK AFK+LLES NV SDWTWEQ ++ I++
Sbjct: 376 KEMSVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVH 435
Query: 81 DKRYGALRSLGERKQAFNE 99
DKRYGALR+LGERKQAFNE
Sbjct: 436 DKRYGALRTLGERKQAFNE 454
>AT1G44910.1 | pre-mRNA-processing protein 40A |
Chr1:16975930-16982818 FORWARD LENGTH=958 | 201606
Length = 958
Score = 106 bits (264), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 21 KGTAVAGMINGTSSEEKAVDDETLTYATKQEAKVAFKTLLESANVESDWTWEQAMRVIIN 80
K +V G N + + +KA +E + YATKQEAK AFK+LLES NV SDWTWEQ ++ I++
Sbjct: 376 KEMSVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEIVH 435
Query: 81 DKRYGALRSLGERKQAFNE 99
DKRYGALR+LGERKQAFNE
Sbjct: 436 DKRYGALRTLGERKQAFNE 454
>AT3G19670.3 | pre-mRNA-processing protein 40B |
Chr3:6828242-6836582 REVERSE LENGTH=992 | 201606
Length = 992
Score = 95.9 bits (237), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 32 TSSEEKAVDDETLTYATKQEAKVAFKTLLESANVESDWTWEQAMRVIINDKRYGALRSLG 91
+ +EEK + E+ ++ K EA FK+LL+SA V SDWTWEQAMR IINDKRYGALR+LG
Sbjct: 433 SQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLG 492
Query: 92 ERKQAFNE 99
ERKQAFNE
Sbjct: 493 ERKQAFNE 500
>AT3G19670.2 | pre-mRNA-processing protein 40B |
Chr3:6828242-6836582 REVERSE LENGTH=992 | 201606
Length = 992
Score = 95.9 bits (237), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 32 TSSEEKAVDDETLTYATKQEAKVAFKTLLESANVESDWTWEQAMRVIINDKRYGALRSLG 91
+ +EEK + E+ ++ K EA FK+LL+SA V SDWTWEQAMR IINDKRYGALR+LG
Sbjct: 433 SQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLG 492
Query: 92 ERKQAFNE 99
ERKQAFNE
Sbjct: 493 ERKQAFNE 500
>AT3G19670.1 | pre-mRNA-processing protein 40B |
Chr3:6828242-6836582 REVERSE LENGTH=992 | 201606
Length = 992
Score = 95.9 bits (237), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 32 TSSEEKAVDDETLTYATKQEAKVAFKTLLESANVESDWTWEQAMRVIINDKRYGALRSLG 91
+ +EEK + E+ ++ K EA FK+LL+SA V SDWTWEQAMR IINDKRYGALR+LG
Sbjct: 433 SQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLG 492
Query: 92 ERKQAFNE 99
ERKQAFNE
Sbjct: 493 ERKQAFNE 500