BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4510.1
(180 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G52990.2 | thioredoxin family protein | Chr1:19741201-1974344... 52 3e-08
AT1G52990.1 | thioredoxin family protein | Chr1:19740503-1974344... 51 7e-08
AT3G23320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 2e-07
AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 4e-07
AT1G47497.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 47 1e-06
>AT1G52990.2 | thioredoxin family protein | Chr1:19741201-19743449
REVERSE LENGTH=243 | 201606
Length = 243
Score = 52.4 bits (124), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 32 FDASFKRTTEDAGIAFVVFDNTGKSI-AGESKGIRCRSIDEGESMALLWAVRWAIDKGKR 90
+DAS +G+ +++ ++ G + G K + +E E AL+WA++ G
Sbjct: 52 YDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATSAFGYT 111
Query: 91 SVLFCGDSKNV---INTLNQNDRRTYHLHWTSVHVLDKIRSLTTSFVNVKFMYVNRSVNI 147
V+F GD+ NV INT + N R H LD I+S SF + +F++ +R N
Sbjct: 112 KVIFEGDNSNVNRLINTKSDNPRLK--------HYLDTIKSWIPSFTSTEFIFTHREQNQ 163
Query: 148 KADNLL 153
AD L+
Sbjct: 164 CADTLV 169
>AT1G52990.1 | thioredoxin family protein | Chr1:19740503-19743449
REVERSE LENGTH=313 | 201606
Length = 313
Score = 51.2 bits (121), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 32 FDASFKRTTEDAGIAFVVFDNTGKSI-AGESKGIRCRSIDEGESMALLWAVRWAIDKGKR 90
+DAS +G+ +++ ++ G + G K + +E E AL+WA++ G
Sbjct: 52 YDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWAIQATSAFGYT 111
Query: 91 SVLFCGDSKNV---INTLNQNDRRTYHLHWTSVHVLDKIRSLTTSFVNVKFMYVNRSVNI 147
V+F GD+ NV INT + N R H LD I+S SF + +F++ +R N
Sbjct: 112 KVIFEGDNSNVNRLINTKSDNPRLK--------HYLDTIKSWIPSFTSTEFIFTHREQNQ 163
Query: 148 KADNLL 153
AD L+
Sbjct: 164 CADTLV 169
>AT3G23320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:8344629-8345204 FORWARD
LENGTH=191 | 201606
Length = 191
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 32 FDASFKRTTEDAGIAFVVFDNTGKSI-AGESKGIRCRSIDEGESMALLWAVRWAIDKGKR 90
+D S +D+G+ +++ ++ G + G K ++I E E AL+WA++ A D G R
Sbjct: 42 YDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTALIWAIQCAWDLGYR 101
Query: 91 SVLFCGDSKNVINTLNQNDRRTYHLHWTSVHVLDKIRSLTTSFVNVKFMYVNRSVNIKAD 150
V F GD+ V N L +N L + L+ I+ + +F VKF + +R N+ D
Sbjct: 102 RVEFEGDNITV-NRLIRNKETNPRLR----YYLEFIQQWSKAFTTVKFTFRHREQNVCVD 156
Query: 151 NL 152
L
Sbjct: 157 VL 158
>AT5G65005.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:25967824-25968615 FORWARD
LENGTH=263 | 201606
Length = 263
Score = 48.9 bits (115), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 32 FDASFKRTTEDAGIAFVVFDNTGKSI-AGESKGIRCRSIDEGESMALLWAVRWAIDKGKR 90
+DAS +G+ +++ ++ G I G K + +E E L+WA++ + G +
Sbjct: 117 YDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWAIQASYGFGHK 176
Query: 91 SVLFCGDSKNV---INTLNQNDRRTYHLHWTSVHVLDKIRSLTTSFVNVKFMYVNRSVNI 147
V+F GD++ + INT + N R H LD I+S SF +++F + +R N
Sbjct: 177 KVIFEGDNQTITRMINTKSSNPRLQ--------HFLDTIQSWIPSFESIEFSFKHREQNG 228
Query: 148 KADNL 152
AD L
Sbjct: 229 CADFL 233
>AT1G47497.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:17431038-17431454 REVERSE
LENGTH=138 | 201606
Length = 138
Score = 46.6 bits (109), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 46 AFVVFDNTGKSI-AGESKGIRCRSIDEGESMALLWAVRWAIDKGKRSVLFCGDSKNVINT 104
+V+ D +G+ + AG++ G + E E ALL A++ G R + F GD++ V+
Sbjct: 6 GWVIRDESGQFVGAGQATGNHTSNALESEFQALLIAMQSCWSHGHRKIWFEGDNREVMEI 65
Query: 105 LNQNDRRTYHLHWTSVHVLDKIRSLTTSFVNVKFMYVNRSVNIKADNL----LNGRERIK 160
LN+ R +W + +++ F +F ++NR N AD L L E+ K
Sbjct: 66 LNRRKSRFDTFNW-----IRDVQAWKQRFQECRFTWINRKQNKPADILAKSHLPQNEQFK 120
Query: 161 RLDH 164
D+
Sbjct: 121 FYDY 124