BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4520.1
(288 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 78 7e-16
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 61 3e-10
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 20/244 (8%)
Query: 2 VWRLQTHTDSLWCNFVKYKYYPRTTIERARV-TNSSWLWKGIHRRISLVKDLSMWEVGDG 60
+WR+ + +SL K +Y+ ++ A + + S++WK IH +++ + VG+G
Sbjct: 73 MWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNG 132
Query: 61 SRIHIWHDNWIPGK-----LALNVVP--EHANFYYVNQLRN----DQNHWNVELLHELFD 109
I IW W+ K L + VP E+A+ + ++ + W +++ LF
Sbjct: 133 EDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFP 192
Query: 110 EHTCDLILSIPLNGQHTQDPLKWTLTQNGTFSVSSLY--------KHLTCYQTVELNDKN 161
E LI + G+ D W T +G ++V S Y K + + E +
Sbjct: 193 EVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNP 252
Query: 162 YWNDLWKLEVTPRIKIFMWTLSLNMVPFYDILSPFMNLPSILCPLCNETNETWRHFVLRC 221
+ +WK + +P+I+ F+W N +P L+ C C ET H + +C
Sbjct: 253 IYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKC 312
Query: 222 PFTR 225
F R
Sbjct: 313 TFAR 316
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 113/281 (40%), Gaps = 21/281 (7%)
Query: 17 VKYKYYPRTTIERARV-TNSSWLWKGIHRRISLVKDLSMWEVGDGSRIHIWHDNWI---- 71
+K +Y+ +I A+V S+ W + I+L+K + +GDG I I DN +
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 72 PGKLALNVVPEHANFYYVNQLRNDQNHWNVELLHELFDEHTCDLILSIPLNGQHTQDPLK 131
P L + + + + W+ + + D+ I I L D +
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 132 WTLTQNGTFSVSSLY---KHLTCYQTVELNDKNYWNDL----WKLEVTPRIKIFMW-TLS 183
W G ++V S Y H +N + DL W L + P++K F+W LS
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 184 LNMVPFYDILSPFMNL-PSILCPLCNETNETWRHFVLRCPFTRGIIYEISNGLHTDRMEG 242
+ + + M + PS CP C+ NE+ H + CPF + L +++
Sbjct: 181 QALATTERLTTRGMRIDPS--CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS 238
Query: 243 SSFKDWITQLGGIKSDVPPTDISLKSKLMIA--IWYCWKER 281
+ F++ I+ + D +D KL+ IW WK R
Sbjct: 239 NDFEENISNILNFVQDTTMSDF---HKLLPVWLIWRIWKAR 276