BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4600.1
(81 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32210.1 | cysteine-rich/transmembrane domain A-like protein ... 46 5e-08
AT2G32190.1 | cysteine-rich/transmembrane domain A-like protein ... 44 2e-07
AT1G56060.2 | cysteine-rich/transmembrane domain protein B | Chr... 40 7e-06
>AT2G32210.1 | cysteine-rich/transmembrane domain A-like protein |
Chr2:13678077-13678554 FORWARD LENGTH=71 | 201606
Length = 71
Score = 45.8 bits (107), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 41 GYPPPQQGYPPQQQKPQK-QGPGAMEGCLAALCCCCLLDACF 81
GYP + K +G G ++GCLAA+CCCC+LDACF
Sbjct: 30 GYPTNDTSHATVATVETKSKGDGFLKGCLAAMCCCCVLDACF 71
>AT2G32190.1 | cysteine-rich/transmembrane domain A-like protein |
Chr2:13674588-13675092 FORWARD LENGTH=71 | 201606
Length = 71
Score = 44.3 bits (103), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 41 GYPPPQQGYPPQQ-QKPQKQGPGAMEGCLAALCCCCLLDACF 81
GYP + + + +G G ++GCLAA+CCCC+LDACF
Sbjct: 30 GYPTSDISHATVAPVETKSKGDGFLKGCLAAMCCCCVLDACF 71
>AT1G56060.2 | cysteine-rich/transmembrane domain protein B |
Chr1:20966737-20967133 REVERSE LENGTH=71 | 201606
Length = 71
Score = 40.4 bits (93), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Query: 18 PPQGYPPQQGYPPQQGYPPQQGYGYPPPQQGYPPQQQKPQKQGPGA-MEGCLAALCCCCL 76
PP GYP PQ PP +G Q +G G + GCLAA+CCCC+
Sbjct: 24 PPMGYPVMMKDSPQTVQPPHEG-----------------QSKGSGGFLRGCLAAMCCCCV 66
Query: 77 LDACF 81
LD F
Sbjct: 67 LDCVF 71