BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000058.1_g4640.1
(118 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04840.1 | Ribosomal protein S3Ae | Chr3:1329751-1331418 FORW... 139 3e-42
AT4G34670.1 | Ribosomal protein S3Ae | Chr4:16548724-16550222 FO... 139 4e-42
>AT3G04840.1 | Ribosomal protein S3Ae | Chr3:1329751-1331418
FORWARD LENGTH=262 | 201606
Length = 262
Score = 139 bits (351), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/86 (87%), Positives = 81/86 (94%)
Query: 1 MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSLFSVRNVGKTLVSRTQGTKIASEG 60
MAVGKNKRISKG+KGGKKK VDPF+KKDWYD+KAPS+F+ RNVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEG 60
Query: 61 LKHRVFEVCLADLQNDEDQSYRKIRL 86
LKHRVFEV LADLQ DED +YRKIRL
Sbjct: 61 LKHRVFEVSLADLQGDEDNAYRKIRL 86
>AT4G34670.1 | Ribosomal protein S3Ae | Chr4:16548724-16550222
FORWARD LENGTH=262 | 201606
Length = 262
Score = 139 bits (351), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 75/86 (87%), Positives = 80/86 (93%)
Query: 1 MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSLFSVRNVGKTLVSRTQGTKIASEG 60
MAVGKNKRISKG+KGGKKK VDPF+KKDWYD+KAP F+ RNVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEG 60
Query: 61 LKHRVFEVCLADLQNDEDQSYRKIRL 86
LKHRVFEV LADLQNDED +YRKIRL
Sbjct: 61 LKHRVFEVSLADLQNDEDNAYRKIRL 86