BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000065.1_g0010.1
(186 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 86 1e-19
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 86 1e-19
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 60 4e-11
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 53 3e-09
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 86.3 bits (212), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 39 YLSAIGALLYLAQCTRPDISFAVNLLARFSSALTKRHWMGVKQILRYLRGTTDMGLFYPK 98
Y IG L+YL Q TR DISFAVN L++FS A H V +IL Y++GT GLFY
Sbjct: 378 YRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 99 SPSNGSQVIGYTDAGYLFDPHKGVSQTGYVFTSGGTAFSWRSSKQSMPATSSNHSEIIAL 158
QV ++DA + S GY G + SW+S KQ + + SS +E AL
Sbjct: 437 QAEMQLQV--FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRAL 494
Query: 159 HEATRECVWLRSIISHIKI 177
AT E +WL +++
Sbjct: 495 SFATDEMMWLAQFFRELQL 513
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 86.3 bits (212), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 39 YLSAIGALLYLAQCTRPDISFAVNLLARFSSALTKRHWMGVKQILRYLRGTTDMGLFYPK 98
Y IG L+YL Q TR DISFAVN L++FS A H V +IL Y++GT GLFY
Sbjct: 378 YRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 99 SPSNGSQVIGYTDAGYLFDPHKGVSQTGYVFTSGGTAFSWRSSKQSMPATSSNHSEIIAL 158
QV ++DA + S GY G + SW+S KQ + + SS +E AL
Sbjct: 437 QAEMQLQV--FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRAL 494
Query: 159 HEATRECVWLRSIISHIKI 177
AT E +WL +++
Sbjct: 495 SFATDEMMWLAQFFRELQL 513
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 60.5 bits (145), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 1 MDNAYPLSTPIVVR---SLDTGKDPYRPKEDNEELLGPEVPYLSAIGALLYLAQCTRPDI 57
M + P+STP+ ++ S+ T K P P + + S +GAL YL TRPDI
Sbjct: 71 MLDCKPMSTPLPLKLNSSVSTAKYP-DPSD-----------FRSIVGALQYLT-LTRPDI 117
Query: 58 SFAVNLLARFSSALTKRHWMGVKQILRYLRGTTDMGLFYPKSPSNGSQVIGYTDAGYLFD 117
S+AVN++ + T + +K++LRY++GT GL+ K+ Q + D+ +
Sbjct: 118 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQ--AFCDSDWAGC 175
Query: 118 PHKGVSQTGYVFTSGGTAFSWRSSKQSMPATSSNHSEIIALHEATRECVW 167
S TG+ G SW + +Q + SS +E AL E W
Sbjct: 176 TSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 53.1 bits (126), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 53 TRPDISFAVNLLARFSSALTKRHWMGVKQILRYLRGTTDMGLFYPKSPSNGSQVIGYTDA 112
TRPD++FAVN L++FSSA V ++L Y++GT GLFY S ++ Q+ + D+
Sbjct: 6 TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY--SATSDLQLKAFADS 63
Query: 113 GYLFDPHKGVSQTGY 127
+ P S TG+
Sbjct: 64 DWASCPDTRRSVTGF 78