BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0020.1
(124 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 43 2e-05
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 41 8e-05
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 42.7 bits (99), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 23 ECESLAILYGLLSAMQLQLSYVHLESDNKAIIQALNGEEGCIQWQS-QSIIRQIKDIKDN 81
E E A+ + +LS + Q +YV ESD++ +I+ LN +E W S + I+ ++ +
Sbjct: 472 EAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQ 528
Query: 82 FSGIIFSHVSRNGNNYADALAK 103
F+ + F + R GN A+ +A+
Sbjct: 529 FTEVKFVFIPREGNTLAERVAR 550
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 41.2 bits (95), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 25 ESLAILYGLLSAMQLQLSYVHLESDNKAIIQALNGEEGCIQWQSQSIIRQIKDIKDNFSG 84
E+ AI +L A+QL+ S + + SD+K+I+ ALN + ++ +I+ I++ F
Sbjct: 208 EAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSLN--EIFGLLVEIRSIRNRFRS 265
Query: 85 IIFSHVSRNGNNYADALAK 103
I F + R N+ ADA AK
Sbjct: 266 ISFQFIPRLVNSIADAAAK 284