BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0090.1
(413 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29940.1 | nuclear RNA polymerase A2 | Chr1:10479322-10486670... 426 e-139
AT5G45140.3 | nuclear RNA polymerase C2 | Chr5:18250295-18257713... 65 8e-11
AT5G45140.2 | nuclear RNA polymerase C2 | Chr5:18247416-18257713... 65 9e-11
AT5G45140.1 | nuclear RNA polymerase C2 | Chr5:18247416-18257713... 65 9e-11
AT4G21710.1 | DNA-directed RNA polymerase family protein | Chr4:... 50 3e-06
>AT1G29940.1 | nuclear RNA polymerase A2 | Chr1:10479322-10486670
REVERSE LENGTH=1178 | 201606
Length = 1178
Score = 426 bits (1095), Expect = e-139, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 268/369 (72%), Gaps = 11/369 (2%)
Query: 11 DYDNLRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDEKHE--------LYRPQKQ 62
D+ L L HIESFDY GL+ M IKP+ V D E ++ PQK+
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQKE 74
Query: 63 RHNSALSDE-LYPFECRQGGLSYSGKFLIDVNIQIGNRKPVREKFNFGQLPIMLKSKLCH 121
S E L PFECRQ +SY+G F+ DV + + VR+KF+FGQ PIML SKLC
Sbjct: 75 SFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCS 134
Query: 122 LRDADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSFREKREGYSD 181
L+ AD R L+ KE +EMGGYFILNG+ER+ R VI PKRN+P ++ R+SFR+++EGYS
Sbjct: 135 LKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSS 194
Query: 182 KAVVIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALIDTTDLEIYES 241
KAVV RCVRDD S++TV+LYYL+NGSAR+GFWI GRE+ LPVGLVLKAL ++ D EIYES
Sbjct: 195 KAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYES 254
Query: 242 LTSCYNEMHKQREGVVGTQLVGERVKIILDEVKEMS--TRSQCLQHLGQHFQPVIGGLEA 299
L CY+E + + +G +GTQLV ER KIILDEV+++ TR QC +HLGQHFQPV+ G++
Sbjct: 255 LNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKK 314
Query: 300 ESHFAVGEIILKDYVLVHLENNHDKFNLLIFMLQKLFAFVDQTASLDNTDALQNHEVLLP 359
ES V E +L+DY+ VHL+N+HDKFNLLIF++QKL++ VDQT+ DN D+LQN E+L+P
Sbjct: 315 ESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVP 374
Query: 360 GHLITLYLK 368
GH+IT+YLK
Sbjct: 375 GHVITIYLK 383
>AT5G45140.3 | nuclear RNA polymerase C2 | Chr5:18250295-18257713
REVERSE LENGTH=832 | 201606
Length = 832
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 58/373 (15%)
Query: 15 LRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDEKHELYRPQKQRH------NSAL 68
+R L K H++SF+YF+ G+ + +K S + R +K R N
Sbjct: 42 VRGLVKQHLDSFNYFINVGIHKI---VKANSRITSTVDPSIYLRFKKVRVGEPSIINVNT 98
Query: 69 SDELYPFECRQGGLSYSGKFLIDVNIQIGNR----KPVREKFNFGQLPIMLKSKLCHLRD 124
+ + P CR ++Y+ +++ G+ K ++ G++PIML+S C L
Sbjct: 99 VENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHG 158
Query: 125 ADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSFREKREGYSDKAV 184
D L E + GGYFI+ G E+++ + +N R ++G + +V
Sbjct: 159 KDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN------RIIIDSDKKGNINASV 212
Query: 185 VIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALIDTTDLEIYESLTS 244
+ +T +Q ++ ++ +P+ +VLKA+ +D EI
Sbjct: 213 T------SSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEI------ 260
Query: 245 CYNEMHKQREGVVGTQLVGERVKI---ILDEVKE-----MSTRSQCLQHLGQHFQPVIGG 296
Q+VG + +L ++E ++T+ Q L +L + + G
Sbjct: 261 --------------VQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYG 306
Query: 297 LEAESHFAVGEIILKDYVLVHLENNHDKFNLLIF----MLQKLFAFVDQTASLDNTDALQ 352
E IL+D L H+ + F F ML+++ + ++D+ D +
Sbjct: 307 TPPEKD-GRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 365
Query: 353 NHEVLLPGHLITL 365
N + L G LI+L
Sbjct: 366 NKRLELSGQLISL 378
>AT5G45140.2 | nuclear RNA polymerase C2 | Chr5:18247416-18257713
REVERSE LENGTH=1161 | 201606
Length = 1161
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 58/373 (15%)
Query: 15 LRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDEKHELYRPQKQRH------NSAL 68
+R L K H++SF+YF+ G+ + +K S + R +K R N
Sbjct: 42 VRGLVKQHLDSFNYFINVGIHKI---VKANSRITSTVDPSIYLRFKKVRVGEPSIINVNT 98
Query: 69 SDELYPFECRQGGLSYSGKFLIDVNIQIGNR----KPVREKFNFGQLPIMLKSKLCHLRD 124
+ + P CR ++Y+ +++ G+ K ++ G++PIML+S C L
Sbjct: 99 VENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHG 158
Query: 125 ADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSFREKREGYSDKAV 184
D L E + GGYFI+ G E+++ + +N R ++G + +V
Sbjct: 159 KDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN------RIIIDSDKKGNINASV 212
Query: 185 VIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALIDTTDLEIYESLTS 244
+ +T +Q ++ ++ +P+ +VLKA+ +D EI
Sbjct: 213 T------SSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEI------ 260
Query: 245 CYNEMHKQREGVVGTQLVGERVKI---ILDEVKE-----MSTRSQCLQHLGQHFQPVIGG 296
Q+VG + +L ++E ++T+ Q L +L + + G
Sbjct: 261 --------------VQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYG 306
Query: 297 LEAESHFAVGEIILKDYVLVHLENNHDKFNLLIF----MLQKLFAFVDQTASLDNTDALQ 352
E IL+D L H+ + F F ML+++ + ++D+ D +
Sbjct: 307 TPPEKD-GRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 365
Query: 353 NHEVLLPGHLITL 365
N + L G LI+L
Sbjct: 366 NKRLELSGQLISL 378
>AT5G45140.1 | nuclear RNA polymerase C2 | Chr5:18247416-18257713
REVERSE LENGTH=1161 | 201606
Length = 1161
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 58/373 (15%)
Query: 15 LRELFKPHIESFDYFLEFGLEAMLLHIKPIEVRDSEDEKHELYRPQKQRH------NSAL 68
+R L K H++SF+YF+ G+ + +K S + R +K R N
Sbjct: 42 VRGLVKQHLDSFNYFINVGIHKI---VKANSRITSTVDPSIYLRFKKVRVGEPSIINVNT 98
Query: 69 SDELYPFECRQGGLSYSGKFLIDVNIQIGNR----KPVREKFNFGQLPIMLKSKLCHLRD 124
+ + P CR ++Y+ +++ G+ K ++ G++PIML+S C L
Sbjct: 99 VENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHG 158
Query: 125 ADPRTLVSFKEEATEMGGYFILNGLERLVRLVIMPKRNYPMNVERSSFREKREGYSDKAV 184
D L E + GGYFI+ G E+++ + +N R ++G + +V
Sbjct: 159 KDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN------RIIIDSDKKGNINASV 212
Query: 185 VIRCVRDDLSALTVRLYYLQNGSARLGFWIEGREFFLPVGLVLKALIDTTDLEIYESLTS 244
+ +T +Q ++ ++ +P+ +VLKA+ +D EI
Sbjct: 213 T------SSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEI------ 260
Query: 245 CYNEMHKQREGVVGTQLVGERVKI---ILDEVKE-----MSTRSQCLQHLGQHFQPVIGG 296
Q+VG + +L ++E ++T+ Q L +L + + G
Sbjct: 261 --------------VQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYG 306
Query: 297 LEAESHFAVGEIILKDYVLVHLENNHDKFNLLIF----MLQKLFAFVDQTASLDNTDALQ 352
E IL+D L H+ + F F ML+++ + ++D+ D +
Sbjct: 307 TPPEKD-GRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 365
Query: 353 NHEVLLPGHLITL 365
N + L G LI+L
Sbjct: 366 NKRLELSGQLISL 378
>AT4G21710.1 | DNA-directed RNA polymerase family protein |
Chr4:11535684-11542200 REVERSE LENGTH=1188 | 201606
Length = 1188
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Query: 10 SDYDNLRELFKPHIESFDYFLEFGLEAMLLHIKPIEVR--DSEDEKHE------------ 55
S Y + L + ++SFD F++ ++ ++ IE+R + H+
Sbjct: 31 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISF 90
Query: 56 ----LYRPQKQRHNSALSDELYPFECRQGGLSYSGKFLIDVNIQIGNR----KPVREKFN 107
L +P + + L+P R L+YS +DV ++ + + V E +
Sbjct: 91 GQIYLSKPMMTESDGETA-TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 149
Query: 108 F-----GQLPIMLKSKLCHLRDADPRTLVSFKEEATEMGGYFILNGLERLV 153
F G++PIML+S C L + L E + GGYFI+NG E+++
Sbjct: 150 FTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 200