BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0100.1
(446 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 82 2e-16
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 76 1e-14
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 75 2e-14
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 71 2e-13
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 1e-12
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/440 (23%), Positives = 193/440 (43%), Gaps = 73/440 (16%)
Query: 33 VQSGNEINIWEDNWI---PET-----DRTVSNNYNS--NLTKVSQLI--TNNKWDDGLLN 80
V +G +I IW W+ P + R Y S ++ KVS LI + +W ++
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIE 188
Query: 81 ANFDADTQNLIKAI-PMNSEGKDNLKWKLSKSGKFTVASMYKYLSTNSINQNLNPRN--- 136
F + LI + P D+ W + SG +TV S Y ++ T IN+ +P+
Sbjct: 189 MLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY-WVLTQIINKRSSPQEVSE 247
Query: 137 ----------WKCIRSLPAIHRIILFMWKICNKALPVRERIG-KYIKITTNCPNCTNI-E 184
WK S P I F+WK + +LPV + +++ + C C + E
Sbjct: 248 PSLNPIYQKIWKSQTS-PKIQH---FLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKE 303
Query: 185 SIEHALLHCAIARNIWFHFNII-------SENISSITEWIFSWE-AHPDLCLTAENIHYT 236
++ H L C AR W +I +++I W+F+ +P ++ + +
Sbjct: 304 TVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPW- 362
Query: 237 TILWVLWKIRCDHCFQHEFNDLPKIIKMIENFPKINKKRVKTK-----------QTTRHK 285
+LW LWK R + F+ + ++++ E+ + + R++T+ +++ +
Sbjct: 363 -LLWRLWKNRNELVFRGREFNAQEVLRRAED--DLEEWRIRTEAESCGTKPQVNRSSCGR 419
Query: 286 WQPPSYGFIKINVDASFVNITSIAGISMISHDDNA--RFMQAQAITTRGRNSE-ECEAMA 342
W+PP + ++K N DA++ GI + ++ ++M A+A+ E E EAM
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAM- 478
Query: 343 ILLGKEWA----KSKNHKSIIIESDNSNLIKHLGNKRHTIHWQSM-IHVRKIRESMKEFE 397
WA + +I ESD+ LI+ L N W S+ ++ ++ + +F
Sbjct: 479 -----RWAVLSLSRFQYNYVIFESDSQVLIEILNNDE---IWPSLKPTIQDLQRLLSQFT 530
Query: 398 AVHFHHTRRELNSNADKLAK 417
V F RE N+ A+++A+
Sbjct: 531 EVKFVFIPREGNTLAERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 154/386 (39%), Gaps = 55/386 (14%)
Query: 74 WDDGLLNANFDADTQNLIKAIPM-NSEGKDNLKWKLSKSGKFTVASMYKYL----STN-- 126
WDD ++ D I I + S+ D + W + +G++TV S Y L STN
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 127 SINQ-----NLNPRNWKCIRSLPAIHRIILFMWKICNKALPVRERI-GKYIKITTNCPNC 180
+IN +L R W +LP + ++ F+W+ ++AL ER+ + ++I +CP C
Sbjct: 148 AINPPHGSIDLKTRIW----NLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRC 203
Query: 181 -TNIESIEHALLHCAIARNIW-----------FHFNIISENISSITEWIFSWEAHPDLCL 228
ESI HAL C A W N ENIS+I ++
Sbjct: 204 HRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQD--------T 255
Query: 229 TAENIHYTTILWVLWKI---RCDHCFQHEFNDLPKIIKM-----IENFPKINKKRVKTKQ 280
T + H +W++W+I R + F ++F + P + ++ + KT
Sbjct: 256 TMSDFHKLLPVWLIWRIWKARNNVVF-NKFRESPSKTVLSAKAETHDWLNATQSHKKTPS 314
Query: 281 TTRH------KWQPPSYGFIKINVDASF-VNITSIAGISMISHDDNARFMQAQAITTRGR 333
TR +W+ P ++K N DA F V G +I +
Sbjct: 315 PTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTS 374
Query: 334 NSEECEAMAILLGKEWAKSKNHKSIIIESDNSNLIKHLGNKRHTIHWQSMIHVRKIRESM 393
N E E A+L + + + + +E D LI + + H H+ I
Sbjct: 375 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGI--SFHSSLANHLEDISFWA 432
Query: 394 KEFEAVHFHHTRRELNSNADKLAKWA 419
+F ++ F RR+ N A LAK+
Sbjct: 433 NKFASIQFGFIRRKGNKLAHVLAKYG 458
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 36/328 (10%)
Query: 140 IRSLPAIHRIILFMWKICNKALPVRERIGK-YIKITTNCPNC-TNIESIEHALLHCAIAR 197
I L +I F+WK+ + AL + + + +I+ C C E+ +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 198 NIWFHFNIISENISSITEWIFSWEAHPDL----CLTAENIHYTT----ILWVLWKIRCDH 249
+W I + + + + E +L CL ILW LWK R
Sbjct: 78 QVWRASGIPHQELRTTG---ITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQL 134
Query: 250 CFQH-----------------EFNDLPKIIKMIENFPKINKKRVKTKQTTRHKWQPPSYG 292
FQ E+ D ++ + +++ R + R KWQ P
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQ--QVHSSRHQQPTMARTKWQRPPST 192
Query: 293 FIKINVDASFVNITSIAGISMISHDDNARFM-QAQAITTRGRNSEECEAMAILLGKEWAK 351
+IK N D +F + T A + D+N +M QAI + +S E E A+++ + A
Sbjct: 193 WIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAW 252
Query: 352 SKNHKSIIIESDNSNLIKHLGNKRHTIHWQSMIHVRKIRESMKEFEAVHFHHTRRELNSN 411
S+ ++ +I E D+ + + + N++ +++ +R+ R K FE F R N
Sbjct: 253 SQGYRKVIFEGDSKQVEELMNNEK--LNFGRFNWIREGRFWQKRFEEAVFKWVPRTNNQP 310
Query: 412 ADKLAKWARKRNRS-KVWENIPCILIDT 438
AD LAK + N+S K +P + T
Sbjct: 311 ADILAKHHLQPNQSFKFHYYVPAFITST 338
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 26/262 (9%)
Query: 175 TNCPNCTNIESIEHALLHCAIARNIW-------FHFNIISENISSITEWIFSWEAH-PDL 226
CP+ E++ H L C AR +W + ++++ + W+ + E P L
Sbjct: 13 VRCPDSR--ETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKL 70
Query: 227 CLTAENIHYTTILWVLWKIRCDHCFQHEFNDLPKII-KMIENFPKINKKR-----VKTKQ 280
+ + +LW LWK R + F+ + D P+++ + +E+F + + +R Q
Sbjct: 71 GKIGNLVPW--LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQ 128
Query: 281 TTRH---KWQPPSYGFIKINVDASFVNITSIAGISMISHDDNAR--FMQAQAITTRGRNS 335
R+ +W+ P Y ++K N DA++ GI I +++ +M A+A+ R +N
Sbjct: 129 VERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARAL-PRTKNV 187
Query: 336 EECEAMAILLGKEWAKSKNHKSIIIESDNSNLIKHLGNKRHTIHWQSMIHVRKIRESMKE 395
E E A+ N+K II ESD L+ L + Q + I++ +
Sbjct: 188 LEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQPALE--DIQQLLHH 245
Query: 396 FEAVHFHHTRRELNSNADKLAK 417
FE V F T R N AD++A+
Sbjct: 246 FEEVKFEFTPRGGNKVADRIAR 267
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 270 KINKKRVKTKQTTRH-KWQPPSYGFIKINVDASFVNITSIAGISMISHDDNARFMQA-QA 327
+IN + ++ H +W+ P G+IK N D SFVN + + D N ++ A QA
Sbjct: 35 QINTRSRGVREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQA 94
Query: 328 ITTRGRNSEECEAMAILLGKEWAKSKNHKSIIIESDNSNLIKHLGNKRHTIHWQSMIHVR 387
I + N+ E E A+++ + S +K + E DN L + + +++ +R
Sbjct: 95 IGRKVDNALESEIQALIISMQHCWSHGYKRVCFEGDNKMLFDLINGSK--VYFGVHNWIR 152
Query: 388 KIRESMKEFEAVHFHHTRRELNSNADKLAK 417
I +++FE++HF+ RR N+ AD LAK
Sbjct: 153 DIHWWLRKFESIHFNWIRRHHNTPADILAK 182