BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0110.1
(933 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 187 2e-50
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 138 7e-34
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 138 7e-34
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 131 6e-31
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 112 1e-25
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 187 bits (476), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/561 (25%), Positives = 261/561 (46%), Gaps = 30/561 (5%)
Query: 359 AIPVYFLSTNLAPKKVLNDIEKYQRNFWWGHEFNNSKMHYIGWKQLQRDMKLGGLGIRNM 418
A+P Y ++ L PK V I +FWW ++ MH+ W L GG+G +++
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 419 KVVNMALVGKLVWRFLTEKEALWVRLLQAKYLKNEDFWLHKNKSTATSTWKSMLELRQFI 478
+ N+AL+GK +WR L+ E+L ++ +++Y D S + WKS+ ++ +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 479 EPGRCFIVGNGAKIRIWEDPWV---PTINNHRPTK--NQKEINTPSVYRVQELIDTHTKR 533
G +VGNG I IW W+ P R + Q+ + S+ +V +LID +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 534 WNRMLINQIFDQISAREVLKIPLGNSEMEDKQIWIHTERGNFTSKSLYKSILTGMPSTSR 593
W + +I +F ++ + + ++ G + D W +T G++T KS Y +LT + R
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY-WVLTQI-INKR 239
Query: 594 SNSEEVEDFP----WMKLWQQNDIMPRVGMFIWRLLNDAIPTKIKSLRFNVVESRLCPMC 649
S+ +EV + + K+W ++ P++ F+W+ L++++P ++ + C C
Sbjct: 240 SSPQEVSEPSLNPIYQKIW-KSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRC 298
Query: 650 NTLEEDINHLFKECQFAKEVWFRS----PLGLRFTDNKTLKEIIKEWFIEDG-GNER--- 701
+ +E +NHL +C FA+ W S PLG + D+ + W G GN +
Sbjct: 299 PSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLY---WVFNLGNGNPQWEK 355
Query: 702 -VKMSCYILWSLWKARNRKIFDRIPPDSMNIINEAVKLFTEFHIQLDVNADRGVQDKALV 760
++ ++LW LWK RN +F ++ ++ A E+ I+ + + G + +
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESC-GTKPQVNR 414
Query: 761 VFQNRWEPPTGDTIKLNIDGAY--KNGKGASAIVARNSIG-VCILAITDHYEISSAIEAE 817
RW PP +K N D + N + V RN G V + ++ S +EAE
Sbjct: 415 SSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE 474
Query: 818 AKAALLAVQTARQLNMTKVIIEGDAVNVTGACLKEEDQIPWKIRHMVQDIKDEIPKFESV 877
+A AV + + VI E D+ V L ++ P ++ +QD++ + +F V
Sbjct: 475 LEAMRWAVLSLSRFQYNYVIFESDS-QVLIEILNNDEIWP-SLKPTIQDLQRLLSQFTEV 532
Query: 878 VFQNISRTINVAAHKLATNAL 898
F I R N A ++A +L
Sbjct: 533 KFVFIPREGNTLAERVARESL 553
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 138 bits (347), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 222/514 (43%), Gaps = 31/514 (6%)
Query: 232 YAPSISHLMFADDLFFFGQATENNINELKSLLEQYAAFSGQQINYYKSSIQFSKNCPRER 291
Y I+HL FADDL F +++I + + ++A FSG QI+ KS+I +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDND 62
Query: 292 RETLMKTLEVKEMELNDKYLGNYLLKPRNRCKSYDFLLQKMASKLTGWKRNTLSHAGRTT 351
+ ++ + L +YLG LL + Y L++K+ ++ W LS AGR
Sbjct: 63 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 352 LLKNELSAIPVYFLSTNLAPKKVLNDIEKYQRNFWWGHEFNNSKMHYIGWKQLQRDMKLG 411
L+ + + ++ +++S P + +I+ +F W N+K + W + G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 412 GLGIRNMKVVNMALVGKLVWRFLTEKEALWVRLLQAKYLKNEDFW-LHKNKSTATSTWKS 470
GLGIR++K N + KL+WR L+ +LWV+ L+ L+ FW + N + + WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 471 MLELRQFIEPGRCFIVGNGAKIRIWEDPW-----VPTINNHRPTKNQKEINTPSVYRVQE 525
+L+ R + NG+ W D W + + HR + SV +
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASV--AEA 299
Query: 526 LIDTHTKRWNRMLINQIFDQISAREVLKIPLGNSEMEDKQIWIHTERGNFTSKSLYKSIL 585
+++ +R + +I D I+ EV G + ED W +GN ++K
Sbjct: 300 VVNHRPRRHRHDTLLRIEDVIA--EVRH--QGLTSGEDTVRW----KGN---GDIFKPCF 348
Query: 586 TGMPSTSRSNSEEVEDFPWMKLWQQNDIMPRVGMFIWRLLNDAIPTKIKSLRFNVVESRL 645
T + E W K + P+ + W + + + T + L +N
Sbjct: 349 N-TKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 646 CPMCNTLEEDINHLFKECQFAKEVW---FRSPLGLRFTDNKTLKEIIKEWFIEDGGNERV 702
C +C+ L E +HLF C ++ EVW R L FT+ + I+K + G+E
Sbjct: 408 CVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNR--WEAILKLLTNKSLGHEVP 465
Query: 703 KMSCY----ILWSLWKARNRKIFDRIPPDSMNII 732
++ Y L SLWK RN + +P + ++
Sbjct: 466 FLTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMV 499
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 138 bits (347), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 128/514 (24%), Positives = 222/514 (43%), Gaps = 31/514 (6%)
Query: 232 YAPSISHLMFADDLFFFGQATENNINELKSLLEQYAAFSGQQINYYKSSIQFSKNCPRER 291
Y I+HL FADDL F +++I + + ++A FSG QI+ KS+I +
Sbjct: 4 YWMLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDND 62
Query: 292 RETLMKTLEVKEMELNDKYLGNYLLKPRNRCKSYDFLLQKMASKLTGWKRNTLSHAGRTT 351
+ ++ + L +YLG LL + Y L++K+ ++ W LS AGR
Sbjct: 63 KADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQ 122
Query: 352 LLKNELSAIPVYFLSTNLAPKKVLNDIEKYQRNFWWGHEFNNSKMHYIGWKQLQRDMKLG 411
L+ + + ++ +++S P + +I+ +F W N+K + W + G
Sbjct: 123 LISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEG 182
Query: 412 GLGIRNMKVVNMALVGKLVWRFLTEKEALWVRLLQAKYLKNEDFW-LHKNKSTATSTWKS 470
GLGIR++K N + KL+WR L+ +LWV+ L+ L+ FW + N + + WK
Sbjct: 183 GLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKK 241
Query: 471 MLELRQFIEPGRCFIVGNGAKIRIWEDPW-----VPTINNHRPTKNQKEINTPSVYRVQE 525
+L+ R + NG+ W D W + + HR + SV +
Sbjct: 242 ILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASV--AEA 299
Query: 526 LIDTHTKRWNRMLINQIFDQISAREVLKIPLGNSEMEDKQIWIHTERGNFTSKSLYKSIL 585
+++ +R + +I D I+ EV G + ED W +GN ++K
Sbjct: 300 VVNHRPRRHRHDTLLRIEDVIA--EVRH--QGLTSGEDTVRW----KGN---GDIFKPCF 348
Query: 586 TGMPSTSRSNSEEVEDFPWMKLWQQNDIMPRVGMFIWRLLNDAIPTKIKSLRFNVVESRL 645
T + E W K + P+ + W + + + T + L +N
Sbjct: 349 N-TKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS 407
Query: 646 CPMCNTLEEDINHLFKECQFAKEVW---FRSPLGLRFTDNKTLKEIIKEWFIEDGGNERV 702
C +C+ L E +HLF C ++ EVW R L FT+ + I+K + G+E
Sbjct: 408 CVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNR--WEAILKLLTNKSLGHEVP 465
Query: 703 KMSCY----ILWSLWKARNRKIFDRIPPDSMNII 732
++ Y L SLWK RN + +P + ++
Sbjct: 466 FLTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMV 499
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 201/462 (43%), Gaps = 26/462 (5%)
Query: 236 ISHLMFADDLFFFGQATENNINELKSLLEQYAAFSGQQINYYKSSIQFSKNCPRERRETL 295
I+HL FADDL F +++I + + ++A FSG QI+ KS+I + + +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKADI 66
Query: 296 MKTLEVKEMELNDKYLGNYLLKPRNRCKSYDFLLQKMASKLTGWKRNTLSHAGRTTLLKN 355
+ + L +YLG LL + Y L++K+ ++ W LS AGR L+ +
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 356 ELSAIPVYFLSTNLAPKKVLNDIEKYQRNFWWGHEFNNSKMHYIGWKQLQRDMKLGGLGI 415
+ ++ +++S P + +I+ +F W N+K + W + GGLGI
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 416 RNMKVVNMALVGKLVWRFLTEKEALWVRLLQAKYLKNEDFW-LHKNKSTATSTWKSMLEL 474
R++K N + KL+WR L+ +LWV+ L+ L+ FW + N + + WK +L+
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 475 RQFIEPGRCFIVGNGAKIRIWEDPW-----VPTINNHRPTKNQKEINTPSVYRVQELIDT 529
R + NG+ W D W + + HR + SV + +++
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASV--AEAVVNH 303
Query: 530 HTKRWNRMLINQIFDQISAREVLKIPLGNSEMEDKQIWIHTERGNFTSKSLYKSILTGMP 589
+R + +I D I+ + G ED W +GN ++K
Sbjct: 304 RPRRHRHDTLLRIEDVIAEVRHQGLTSG----EDTVRW----KGN---GDIFKPCFNTKE 352
Query: 590 STSRSNSEEVEDFPWMKLWQQNDIMPRVGMFIWRLLNDAIPTKIKSLRFNVVESRLCPMC 649
+ + + +++ W K + P+ + W + + + T + L +N C +C
Sbjct: 353 TWAATREPKLK-VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 411
Query: 650 NTLEEDINHLFKECQFAKEVWFRSPLGLRFTDNKTLKEIIKE 691
+ L E +HLF C ++ EV P R+T TL + KE
Sbjct: 412 HHLVETRDHLFFTCPYSAEV----PFLTRYTFQLTLHSLWKE 449
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 199/476 (41%), Gaps = 47/476 (9%)
Query: 445 LQAKYLKNEDFWLHKNKSTATSTWKSMLELRQFIEPGRCFIVGNGAKIRIWEDPWVPTIN 504
++A+Y K+ K + + W S+L+ ++ G ++G+G IRI D ++
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN---IVD 57
Query: 505 NHRPTKNQKEINTPSVYRVQELIDTHTKR-----WNRMLINQIFDQISAREVLKIPLGNS 559
+H P + +NT Y+ + + ++ W+ I+Q DQ + +I L S
Sbjct: 58 SHPP----RPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKS 113
Query: 560 EMEDKQIWIHTERGNFTSKSLYKSILTGMPSTS--RSNSEEVEDFPWMKLWQQNDIMPRV 617
+ DK IW + G +T +S Y +LT PST+ N ++W IMP++
Sbjct: 114 KKPDKIIWNYNTTGEYTVRSGY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNL-PIMPKL 171
Query: 618 GMFIWRLLNDAIPTKIKSLRFNVVESRLCPMCNTLEEDINHLFKECQFAKEVWFRSPLGL 677
F+WR L+ A+ T + + CP C+ E INH C FA W
Sbjct: 172 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW------- 224
Query: 678 RFTDNKTLK-EIIKEWFIEDGGN-----ERVKMS-------CYILWSLWKARNRKIFDRI 724
R +D+ ++ +++ F E+ N + MS +++W +WKARN +F++
Sbjct: 225 RLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKF 284
Query: 725 PPDSMNIINEAVKLFTEFHIQLDVN-ADRGVQDKALVVFQNR--WEPPTGDTIKLNIDGA 781
+ A E H L+ + + + +N+ W P +K N D
Sbjct: 285 RESPSKTVLSAK---AETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAG 341
Query: 782 YKNGK--GASAIVARNSIGVCI-LAITDHYEISSAIEAEAKAALLAVQTARQLNMTKVII 838
+ K + RN G I S+ +EAE KA L A+Q T+V +
Sbjct: 342 FDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFM 401
Query: 839 EGDAVNVTGACLKEEDQIPWKIRHMVQDIKDEIPKFESVVFQNISRTINVAAHKLA 894
EGD + L + + ++DI KF S+ F I R N AH LA
Sbjct: 402 EGDCQTLIN--LINGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 455