BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0390.1
(538 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 96 9e-21
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 95 3e-20
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 86 2e-18
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 79 2e-15
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 80 2e-15
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 185/448 (41%), Gaps = 59/448 (13%)
Query: 110 ILDNKAFLSKLVWRLLKDPGSPWANI-LKAKYFTKDQKPKKAKNHHSWLWKSLSKHVDKV 168
+LD A L K L+ D NI + P+ ++ +++ ++
Sbjct: 27 LLDGIALLKKGTRHLIGDG----QNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERK 82
Query: 169 ANLMFWDVNKGTNINICDICNSILSINL-QEQLEDTARWTLTKSGKITIKSMYYYLRTE- 226
+ FWD +K + I I L + + D W +G+ T++S Y+ L +
Sbjct: 83 GSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDP 142
Query: 227 ----------HHAYETKEWNFIWNLPIQPKIKLFLWKCCTNSLPVRGKI---GQFIGQMF 273
H + + K IWNLPI PK+K FLW+ + +L ++ G I
Sbjct: 143 STNIPAINPPHGSIDLK--TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP-- 198
Query: 274 ECVYC-RAHESLTHALLHCELATAVW-----------FHFSILSCNITNLYDWIISWKNI 321
C C R +ES+ HAL C AT W + NI+N+ ++ +
Sbjct: 199 SCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNF------V 252
Query: 322 DGQTSSLFANIL-----WQIWKARCDRCFSKVNTLPMMVI--------DQVKRTPNLLKH 368
T S F +L W+IWKAR + F+K P + D + T + K
Sbjct: 253 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 312
Query: 369 QNPTKPKERDSL-WAPPKAPFIKVNVDASFLEGTVMAGIGCIMYDDHANFLAASACNF-R 426
+PT+ + + W P A ++K N DA F + A G I+ + + ++ +
Sbjct: 313 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 372
Query: 427 GQNAEECESWAIVKALQWSSYQKVEYLHIESDNSNIVQTLNGAQVNLSWQASKLIGKIRS 486
N E E+ A++ ALQ + + + +E D ++ +NG + S + + I
Sbjct: 373 TSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSS--LANHLEDISF 430
Query: 487 LEGHFSKVLYTHINREGNEKADILAKWS 514
F+ + + I R+GN+ A +LAK+
Sbjct: 431 WANKFASIQFGFIRRKGNKLAHVLAKYG 458
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 152/349 (43%), Gaps = 47/349 (13%)
Query: 202 DTARWTLTKSGKITIKSMYYYL----RTEHHAYETKE------WNFIWNLPIQPKIKLFL 251
D+ W T SG T+KS Y+ L E E + IW PKI+ FL
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 252 WKCCTNSLPVRGKIG-QFIGQMFECVYCRA-HESLTHALLHCELATAVWFHFSI------ 303
WKC +NSLPV G + + + + C+ C + E++ H L C A W SI
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGG 330
Query: 304 --LSCNITNLYDWIISWKNIDGQ---TSSLFANILWQIWKARCDRCFSKVNTLPMMVIDQ 358
NLY W+ + N + Q S L +LW++WK R + F V+ +
Sbjct: 331 EWADSIYVNLY-WVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRR 389
Query: 359 VK--------RTPNLLKHQNPTKPKERDSLWAPPKAPFIKVNVDASFLEGTVMAGIGCIM 410
+ RT P + W PP ++K N DA++ GIG ++
Sbjct: 390 AEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVL 449
Query: 411 YDDHAN--FLAASACNFRGQNAEECESWAIVKALQWS----SYQKVEYLHIESDNSNIVQ 464
++ ++ A A + ++ E E ++A++W+ S + Y+ ESD+ +++
Sbjct: 450 RNEKGEVKWMGARALP-KLKSVLEAE----LEAMRWAVLSLSRFQYNYVIFESDSQVLIE 504
Query: 465 TLNGAQVNLSWQASK-LIGKIRSLEGHFSKVLYTHINREGNEKADILAK 512
LN ++ W + K I ++ L F++V + I REGN A+ +A+
Sbjct: 505 ILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 53 AVPRYQMQCFALPKGISDRIEVLQRTFWW---EKSKYIHTINWSAICLPKKLGGLGFRFP 109
A+P Y M CF LPK + +I + FWW +++K +H W + K GG+GF+
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 110 ILDNKAFLSKLVWRLLKDPGSPWANILKAKYFTK-DQKPKKAKNHHSWLWKSL 161
N A L K +WR+L P S A + K++YF K D + S++WKS+
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSI 114
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 131/296 (44%), Gaps = 25/296 (8%)
Query: 245 PKIKLFLWKCCTNSLPVRGK-IGQFIGQMFECVYCRAHESLTHALLHCELATAVW----- 298
PKIKLFLWK +LPV + + + I ++C C A E+ TH L HC+ A VW
Sbjct: 2 PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAPL 61
Query: 299 --FHFSILS--CNITNLYDWIISWKNIDGQTSSLFANILWQIWKARCDRCFSKVNTLPMM 354
H I + NL I + T++LF I W IWKAR F +
Sbjct: 62 QLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH---FS 118
Query: 355 VIDQV-KRTPNLLKHQNP--TKPKERDSLWAPPKAPFIKVN----VDASFLEGTVMAGIG 407
VI+ V K + L Q+ PK R + P + + VDA++ + + +AG G
Sbjct: 119 VIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLAGSG 178
Query: 408 CIMY---DDHANFLAASACNFRGQNAEECESWAIVKALQWSSYQKVEYLHIESDNSNIVQ 464
+ SA R + E+WAI A+ + + L + SD+ +IV
Sbjct: 179 WVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVD 238
Query: 465 TLNGAQVNLSWQASKLIGKIRSLEGHFSKVLYTHINREGNEKADILAKWSRMNLGN 520
LN + V+L+ + L+ +IRS+ F + + I R N AD AK S GN
Sbjct: 239 ALN-SNVSLN-EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAKLSLCISGN 292
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 6/187 (3%)
Query: 3 KYLGTHLFIGANKRKLFSSLTSQIQLKLSKWQASLLSPAGRSIVIQTIAAAVPRYQMQCF 62
+YLG L + L +I++++ KW A LS AGR +I ++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 63 ALPKGISDRIEVLQRTFWW---EKSKYIHTINWSAICLPKKLGGLGFRFPILDNKAFLSK 119
LP I+ + +F W E + + WS +C PK GGLG R NK L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 120 LVWRLLKDPGSPWANILKAKYFTKDQKPKKAKNH--HSWLWKSLSKHVDKVANLMFWDVN 177
L+WR+L S W L+ K + N SW+WK + KH + + D++
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 178 KGTNINI 184
G+N +
Sbjct: 205 NGSNTSF 211
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 6/187 (3%)
Query: 3 KYLGTHLFIGANKRKLFSSLTSQIQLKLSKWQASLLSPAGRSIVIQTIAAAVPRYQMQCF 62
+YLG L + L +I++++ KW A LS AGR +I ++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 63 ALPKGISDRIEVLQRTFWW---EKSKYIHTINWSAICLPKKLGGLGFRFPILDNKAFLSK 119
LP I+ + +F W E + + WS +C PK GGLG R NK L K
Sbjct: 140 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 199
Query: 120 LVWRLLKDPGSPWANILKAKYFTKDQKPKKAKNH--HSWLWKSLSKHVDKVANLMFWDVN 177
L+WR+L S W L+ K + N SW+WK + KH + + D++
Sbjct: 200 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 258
Query: 178 KGTNINI 184
G+N +
Sbjct: 259 NGSNTSF 265