BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0410.1
(1180 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 117 3e-26
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 115 3e-26
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 115 3e-26
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 114 1e-25
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 91 1e-18
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 16/333 (4%)
Query: 626 IKHLLFADDCIVFGRNTLDNISHLKKILTTFSEASGQMINYTKSTIFFSNNTHPKFKRMI 685
I HL FADD +VF +I + +I F++ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 686 TRDLKVHQASSLDKYLGTHLFIGANKNQAFSSLLDQIQNKLSKWHTNLLSQAGRSVVLST 745
+ +YLG L + L+++I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 746 IAAAVPRYQMQCFAIPKGISNRIEAIQRAFWWGKSK---SIHTINWSSICLPRKLGGLGF 802
+ ++ + M F +P I++I +F W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 803 RLPALDNQAFLSKLIWRILKNPDSPWAKILKAKYFPKES--KPRSAKTNHSWFWKSIVKH 860
R N+ L KLIWR+L + S W + L+ K S T SW WK I+KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 861 FDKVTSLIFWDVNKGTDINIWHDYW--------IPNHPPPIANTNNSQLTTVAQLVSNNE 912
+ + D++ G++ + W D W + H I + + +VA+ V N+
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHR 304
Query: 913 WNMNILSNCFNREICNAILSINLQATKEDTIRW 945
+ E A + + EDT+RW
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW 337
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 16/333 (4%)
Query: 626 IKHLLFADDCIVFGRNTLDNISHLKKILTTFSEASGQMINYTKSTIFFSNNTHPKFKRMI 685
I HL FADD +VF +I + +I F++ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 686 TRDLKVHQASSLDKYLGTHLFIGANKNQAFSSLLDQIQNKLSKWHTNLLSQAGRSVVLST 745
+ +YLG L + L+++I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 746 IAAAVPRYQMQCFAIPKGISNRIEAIQRAFWWGKSK---SIHTINWSSICLPRKLGGLGF 802
+ ++ + M F +P I++I +F W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 803 RLPALDNQAFLSKLIWRILKNPDSPWAKILKAKYFPKES--KPRSAKTNHSWFWKSIVKH 860
R N+ L KLIWR+L + S W + L+ K S T SW WK I+KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 861 FDKVTSLIFWDVNKGTDINIWHDYW--------IPNHPPPIANTNNSQLTTVAQLVSNNE 912
+ + D++ G++ + W D W + H I + + +VA+ V N+
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHR 304
Query: 913 WNMNILSNCFNREICNAILSINLQATKEDTIRW 945
+ E A + + EDT+RW
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW 337
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 16/333 (4%)
Query: 626 IKHLLFADDCIVFGRNTLDNISHLKKILTTFSEASGQMINYTKSTIFFSNNTHPKFKRMI 685
I HL FADD +VF +I + +I F++ SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 686 TRDLKVHQASSLDKYLGTHLFIGANKNQAFSSLLDQIQNKLSKWHTNLLSQAGRSVVLST 745
+ +YLG L + L+++I+ ++ KW LS AGR ++S+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 746 IAAAVPRYQMQCFAIPKGISNRIEAIQRAFWWGKSK---SIHTINWSSICLPRKLGGLGF 802
+ ++ + M F +P I++I +F W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 803 RLPALDNQAFLSKLIWRILKNPDSPWAKILKAKYFPKES--KPRSAKTNHSWFWKSIVKH 860
R N+ L KLIWR+L + S W + L+ K S T SW WK I+KH
Sbjct: 187 RSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 861 FDKVTSLIFWDVNKGTDINIWHDYW--------IPNHPPPIANTNNSQLTTVAQLVSNNE 912
+ + D++ G++ + W D W + H I + + +VA+ V N+
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHR 304
Query: 913 WNMNILSNCFNREICNAILSINLQATKEDTIRW 945
+ E A + + EDT+RW
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW 337
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 172/404 (42%), Gaps = 82/404 (20%)
Query: 144 LLIGDLNTILHQADKLGG-KEALPAHAMK-IKITINNLGLHDIGFSGPPFTWSNKQYSGN 201
+L+GD + I +D + ++P ++ + + + L DI G +TWSN Q N
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQ-DDN 280
Query: 202 LIQERLDRALTNHQWLNDFPAS-SLTHLPGIGSDHVPILLTTKISPNLGRKPFKFIRTWM 260
I +LDRA+ N W + FP++ ++ L G+ SDH P ++ + P +K F++
Sbjct: 281 PIIRKLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSFLS 339
Query: 261 SHPDCSQFISNNWPN-IPNYIQTKLNSLA--IKLSK-----WNKTVFGHLDTKIKQLTLT 312
+HP ++ W IP + + + SL +K +K N+ FG++ K K+ +
Sbjct: 340 THPTFLVSLTVAWEEQIP--VGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDS 397
Query: 313 IQNVSDK------DTYHNLYNQLEEAYN----QKESLWKEKSRIANIQLG---------- 352
++++ + D+ + + + +N ES +++KSRI +Q G
Sbjct: 398 LESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKV 457
Query: 353 ------------------------TQISEELL----HLF-------------------PI 365
TQ+ E ++ HL P
Sbjct: 458 ILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPF 517
Query: 366 QINDAQNFNLSVTPLEDEIKNVVFSLKPEAAPGPDGYPPFFYHSNWDTVKTDVIEMVTNF 425
+ ND LS P + EI VF++ APGPD + F+ +W VK I V F
Sbjct: 518 RCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEF 577
Query: 426 FRTTHLPPLSNHTHICLIPKTKSPQTTADYRPISLLNTTYKIIT 469
FRT HL N T I LIPK + +RP+S YKIIT
Sbjct: 578 FRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 15/260 (5%)
Query: 699 KYLGTHLFIGANKNQAFSSLLDQIQNKLSKWHTNLLSQAGRSVVLSTIAAAVPRYQMQCF 758
+YLG L + L+++I+ ++ KW LS AGR ++S++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 759 AIPKGISNRIEAIQRAFWWGKSK---SIHTINWSSICLPRKLGGLGFRLPALDNQAFLSK 815
+P I++I +F W + + WS +C P+ GGLG R N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 816 LIWRILKNPDSPWAKILKAKYFPKES--KPRSAKTNHSWFWKSIVKHFDKVTSLIFWDVN 873
LIWR+L + S W + L+ K S T SW WK I+KH + + D++
Sbjct: 146 LIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 204
Query: 874 KGTDINIWHDYW--------IPNHPPPIANTNNSQLTTVAQLVSNNEWNMNILSNCFNRE 925
G++ + W D W + H I + + +VA+ V N+ + E
Sbjct: 205 NGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNHRPRRHRHDTLLRIE 263
Query: 926 ICNAILSINLQATKEDTIRW 945
A + + EDT+RW
Sbjct: 264 DVIAEVRHQGLTSGEDTVRW 283