BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0460.1
(256 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 107 4e-26
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 107 4e-26
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 80 4e-18
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 107 bits (267), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 130 RSRRPPSHLNDYVCMTQSNVP-YPLENYMSINSFSAPHRVFLYSVISTTEPSSFTQAMKL 188
R R P++L DY C + +++ + + ++S S + FL + EPS++ +A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEF 95
Query: 189 PHWREAMANEIKALESNNTWSVVPLPSRKRLIGCKWVYKVKFKSDGSVEHYKARLVARVH 248
W AM +EI A+E+ +TW + LP K+ IGCKWVYK+K+ SDG++E YKARLVA+ +
Sbjct: 96 LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155
Query: 249 SNR 251
+ +
Sbjct: 156 TQQ 158
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 107 bits (267), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 130 RSRRPPSHLNDYVCMTQSNVP-YPLENYMSINSFSAPHRVFLYSVISTTEPSSFTQAMKL 188
R R P++L DY C + +++ + + ++S S + FL + EPS++ +A +
Sbjct: 36 RRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEF 95
Query: 189 PHWREAMANEIKALESNNTWSVVPLPSRKRLIGCKWVYKVKFKSDGSVEHYKARLVARVH 248
W AM +EI A+E+ +TW + LP K+ IGCKWVYK+K+ SDG++E YKARLVA+ +
Sbjct: 96 LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155
Query: 249 SNR 251
+ +
Sbjct: 156 TQQ 158
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 79.7 bits (195), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 171 YSVISTT----EPSSFTQAMKLPHWREAMANEIKALESNNTWSVVPLPSRKRLIGCKWVY 226
YS+ TT EP S A+K P W +AM E+ AL N TW +VP P + ++GCKWV+
Sbjct: 16 YSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVF 75
Query: 227 KVKFKSDGSVEHYKARLVAR-VHSNRGL 253
K K SDG+++ KARLVA+ H G+
Sbjct: 76 KTKLHSDGTLDRLKARLVAKGFHQEEGI 103