BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000066.1_g0470.1
         (155 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    99   4e-26
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    42   6e-05

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 99.4 bits (246), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 7/132 (5%)

Query: 25  DVHHSDSPTTVFITPPLSGD--NYSSWARSMKMALRAKDKLGFVDGSIPKPTSPTELHS- 81
           D+HH       F    LS D  NY +W    +  LR   K GF+DG++PKP   + L+  
Sbjct: 23  DIHHPSD----FSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQP 78

Query: 82  WERCNNLVASWIMNYVATDIRSSILYDESAADIWQNLHDCFYQTNAPKIYQLRRAISSLK 141
           WE+CN +V  W+MN +   +  S++Y E+A  +W++L   F      KIYQLRR +++L+
Sbjct: 79  WEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLR 138

Query: 142 QDGSDVSSYFTK 153
           Q G  V  YF K
Sbjct: 139 QGGDSVEEYFGK 150


>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 35  VFITPPLSGDNYSSWARSMKMALRAKDKLGFVDGSIPKPTSPTELHSWERCNNLVASWIM 94
           +F+T  L+  NY  W    +    +   LG +DGS   PT  TE   W+  + LV  WI 
Sbjct: 22  IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPTPMTE-KRWKERDGLVKMWIY 79

Query: 95  NYVATDIRSSIL-YDESAADIWQNLHDCFYQTNAPKIYQLRRAISSLKQDGSDVSSYFTK 153
             +   +  +I+    +A D+W +L + F      +  Q    + +   D   V  Y  K
Sbjct: 80  GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139

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