BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0480.1
(250 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 117 9e-30
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 2e-13
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 59 7e-10
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 59 9e-10
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 59 9e-10
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 117 bits (293), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 27/274 (9%)
Query: 1 MQCFVIPKGVSKRIKSVQRTFWW---GKSKGICTKAWSYICLSKELGGLGIHLPELDNTV 57
M CF++PK V K+I SV FWW ++KG+ KAW ++ K GG+G E N
Sbjct: 8 MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67
Query: 58 LLSKLAWRLKTEPENLWVKLLKAKYFPHTDKP--GPAKPHHSWSWKTIRKHYTLIEDLNT 115
LL K WR+ + PE+L K+ K++YF H P P S+ WK+I ++
Sbjct: 68 LLGKQMWRMLSRPESLMAKVFKSRYF-HKSDPLNAPLGSRPSFVWKSIHASQEILRQGAR 126
Query: 116 WEVQSGRDINIWEDNWIPEIDGP-------VPNNNHSRLN---KVAQLI--TNNNWNNEI 163
V +G DI IW W+ VP ++ ++ KV+ LI + W ++
Sbjct: 127 AVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDV 186
Query: 164 LNENFDNTTRNLIKAI-PVNSEGKDHLKWKLTNSGKFTVKSMY--------QHLSSHNTN 214
+ F R LI + P D W T+SG +TVKS Y + S +
Sbjct: 187 IEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVS 246
Query: 215 ETLTSQNWKFIWSLPIIPRIKTFIWKICTKALPV 248
E + ++ IW P+I+ F+WK + +LPV
Sbjct: 247 EPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPV 280
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 66.6 bits (161), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 1 MQCFVIPKGVSKRIKSVQRTFWWGKS---KGICTKAWSYICLSKEL-GGLGIHLPELDNT 56
M CF + K + K++ S FWW + I AW +C SKE GGLG N
Sbjct: 8 MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67
Query: 57 VLLSKLAWRLKTEPENLWVKLLKAKYFPHTD-KPGPAKPHHSWSWKTIRKHYTLIEDLNT 115
LL+K ++R+ +P L +LL+++YFPH+ S++W++I L+
Sbjct: 68 ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLL 127
Query: 116 WEVQSGRDINIWEDNWIPEIDGPVPNNN 143
+ G +W D WI + + P+P N
Sbjct: 128 RTIGDGIHTKVWLDRWIMD-ETPLPPLN 154
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 1 MQCFVIPKGVSKRIKSVQRTFWWGKSKGICTKA---WSYICLSKELGGLGIHLPELDNTV 57
M F +P K I S+ +F W + KA WS +C K+ GGLGI + N V
Sbjct: 82 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 141
Query: 58 LLSKLAWRLKTEPENLWVKLLKAKYFPHTD--KPGPAKPHHSWSWKTIRKHYTLIEDLNT 115
L KL WR+ + +LWV+ L+ SW WK I KH L
Sbjct: 142 SLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVK 200
Query: 116 WEVQSGRDINIWEDNW 131
++ +G + + W DNW
Sbjct: 201 HDIHNGSNTSFWFDNW 216
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 1 MQCFVIPKGVSKRIKSVQRTFWWGKSKGICTKA---WSYICLSKELGGLGIHLPELDNTV 57
M F +P K I S+ +F W + KA WS +C K+ GGLGI + N V
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 195
Query: 58 LLSKLAWRLKTEPENLWVKLLKAKYFPHTD--KPGPAKPHHSWSWKTIRKHYTLIEDLNT 115
L KL WR+ + +LWV+ L+ SW WK I KH L
Sbjct: 196 SLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVK 254
Query: 116 WEVQSGRDINIWEDNW 131
++ +G + + W DNW
Sbjct: 255 HDIHNGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 1 MQCFVIPKGVSKRIKSVQRTFWWGKSKGICTKA---WSYICLSKELGGLGIHLPELDNTV 57
M F +P K I S+ +F W + KA WS +C K+ GGLGI + N V
Sbjct: 136 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKV 195
Query: 58 LLSKLAWRLKTEPENLWVKLLKAKYFPHTD--KPGPAKPHHSWSWKTIRKHYTLIEDLNT 115
L KL WR+ + +LWV+ L+ SW WK I KH L
Sbjct: 196 SLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVK 254
Query: 116 WEVQSGRDINIWEDNW 131
++ +G + + W DNW
Sbjct: 255 HDIHNGSNTSFWFDNW 270