BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0520.1
(619 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 93 3e-19
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 90 1e-18
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 90 1e-18
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 88 2e-18
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 72 7e-15
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 4/196 (2%)
Query: 426 LTISHLLFADDCIIFGRNSLDNIHTLKTILDAFCNASGQMINYAKSNIFYSKNSHPKFKR 485
+ I+HL FADD ++F +I + I F + SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 486 IIMRSLKVKYASTSEKYLGAQLFIGANKKQIYNDILHKIKMKLEKWNHSFLSQAGRTIVI 545
I+ S + +YLG L Y ++ KI++++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 546 STIAAVVPRYQMQCFALPKGICKSISTLQKSFWWGKSKGICTK---SWSSICLPKFLGGL 602
S++ + + M F LP K I ++ SF W + K +WS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 603 GIHSPELDNHAMLSKL 618
GI S + N L KL
Sbjct: 185 GIRSLKEANKVSLLKL 200
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 4/196 (2%)
Query: 426 LTISHLLFADDCIIFGRNSLDNIHTLKTILDAFCNASGQMINYAKSNIFYSKNSHPKFKR 485
+ I+HL FADD ++F +I + I F + SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 486 IIMRSLKVKYASTSEKYLGAQLFIGANKKQIYNDILHKIKMKLEKWNHSFLSQAGRTIVI 545
I+ S + +YLG L Y ++ KI++++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 546 STIAAVVPRYQMQCFALPKGICKSISTLQKSFWWGKSKGICTK---SWSSICLPKFLGGL 602
S++ + + M F LP K I ++ SF W + K +WS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 603 GIHSPELDNHAMLSKL 618
GI S + N L KL
Sbjct: 185 GIRSLKEANKVSLLKL 200
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 4/196 (2%)
Query: 426 LTISHLLFADDCIIFGRNSLDNIHTLKTILDAFCNASGQMINYAKSNIFYSKNSHPKFKR 485
+ I+HL FADD ++F +I + I F + SG I+ KS I Y K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTI-YMAGVKDNDKA 64
Query: 486 IIMRSLKVKYASTSEKYLGAQLFIGANKKQIYNDILHKIKMKLEKWNHSFLSQAGRTIVI 545
I+ S + +YLG L Y ++ KI++++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 546 STIAAVVPRYQMQCFALPKGICKSISTLQKSFWWGKSKGICTK---SWSSICLPKFLGGL 602
S++ + + M F LP K I ++ SF W + K +WS +C PK GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 603 GIHSPELDNHAMLSKL 618
GI S + N L KL
Sbjct: 185 GIRSLKEANKVSLLKL 200
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 277 RFKSSLHNIISPSQAAYIPDRQISDNIIMGQEIIHSLKTMKGATGYFGLKLDMSKAFDRI 336
R K + N+I P+QA++IP R +DNI+ QE +HS++ KG G+ LKLD+ KA+DRI
Sbjct: 4 RLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRI 63
Query: 337 EWSFLADILAKLGYSDHWIKMIAQCMTTSSMAVLVNGRPGPIFYPSR-----GIRQGDPL 391
W +L D L G+ + W+ IA+ + GR P G R D
Sbjct: 64 RWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYDDMA 123
Query: 392 SPF 394
+PF
Sbjct: 124 APF 126
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 72.0 bits (175), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 370 LVNGRPGPIFYPSRGIRQGDPLSPFLFTLAMEGLSRLLKEEQDRDNFKGFPTNNPNLTIS 429
++NG P + PSRG+RQGDPLSP+LF L E LS L + Q++ G +N + I+
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 430 HLLFADD 436
HLLFADD
Sbjct: 73 HLLFADD 79