BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0530.1
(219 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 60 7e-11
AT2G46460.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 56 1e-09
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 57 2e-09
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 52 9e-08
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 52 1e-07
>AT2G04420.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:1535561-1536226 FORWARD
LENGTH=221 | 201606
Length = 221
Score = 60.1 bits (144), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 50 TVCKWIRPPAGIIMINTDGSYNL--DRAGFGSILRDSNGDVL-VAVCGGSKPVSVIHHEL 106
T KW +PP G I N DGS+N + G ++RD G A G + + EL
Sbjct: 59 THQKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESEL 118
Query: 107 EGVKAGIELAVQYGFRKAIVATDSLTVHGLLTKLGVKPPWKSFFLW-QQIKSLMGVLEQC 165
+ + ++ G+RK I DS V LL + + F W ++ S E+
Sbjct: 119 QALVMAMQHTWSQGYRKVIFEGDSKQVEELLNRKQMHF---GAFNWIREAWSWSKRFEEV 175
Query: 166 IVKHVFRETNSVADLLSRAHLGQGTTLL 193
I R N AD+L+++HL Q T+ +
Sbjct: 176 IFSWTPRTNNQPADMLAKSHLPQDTSFI 203
>AT2G46460.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:19071537-19072019 FORWARD
LENGTH=160 | 201606
Length = 160
Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 54 WIRPPAGIIMINTDGSYNLDR-AGFGSILRDSNGDVLVA-VCGGSKPVSVIHHELEGVKA 111
W RPP G N DGSYN + + G I+RD +G + A G+ + + E + +
Sbjct: 3 WTRPPHGWKKCNYDGSYNREMPSKAGWIIRDESGQFVSAGQATGNHTSNALESEFQALLI 62
Query: 112 GIELAVQYGFRKAIVATDSLTVHGLLTKLGVKPPWKSFFLW-QQIKSLMGVLEQCIVKHV 170
++ +G RK D+ V +L + + F W + +++ ++C +
Sbjct: 63 TMQSCWSHGHRKIWFEGDNREVMEILNRRKSR---FDIFNWIRDVQAWKQRFQECRFTWI 119
Query: 171 FRETNSVADLLSRAHLGQGTTL 192
R+ N AD+L+++HL Q
Sbjct: 120 NRKQNKPADILAKSHLPQNEQF 141
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 52 CKWIRPPAGIIMINTDGSYNLD--RAGFGSILRDSNGDVL-VAVCGGSKPVSVIHHELEG 108
KW RPP+ I N DG++N A G ++RD NG + GS + E +
Sbjct: 184 TKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQA 243
Query: 109 VKAGIELAVQYGFRKAIVATDSLTVHGLLT--KLGVKPPWKSFFLW-QQIKSLMGVLEQC 165
+ ++ A G+RK I DS V L+ KL F W ++ + E+
Sbjct: 244 LIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEKLNF-----GRFNWIREGRFWQKRFEEA 298
Query: 166 IVKHVFRETNSVADLLSRAHL 186
+ K V R N AD+L++ HL
Sbjct: 299 VFKWVPRTNNQPADILAKHHL 319
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 53 KWIRPPAGIIMINTDGSYNLD--RAGFGSILRDSNGDVL-VAVCGGSKPVSVIHHELEGV 109
+W PP + NTD ++ L+ R G G ILR+ +G VL + + +V+ ELE +
Sbjct: 136 QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEAL 195
Query: 110 KAGIELAVQYGFRKAIVATDSLTVHGLLTKLGVKPPWKSFFLWQQIKSLMGVLEQCIVKH 169
+ + ++ +++ I +D+ + LL P + + I+ L+ E+ +
Sbjct: 196 RWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQPAL--EDIQQLLHHFEEVKFEF 253
Query: 170 VFRETNSVADLLSRAHLG 187
R N VAD ++R +
Sbjct: 254 TPRGGNKVADRIARESIS 271
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 53 KWIRPPAGIIMINTDGSYNLD--RAGFGSILRDSNGDV-LVAVCGGSKPVSVIHHELEGV 109
+W PP + NTD ++N D R G G +LR+ G+V + K SV+ ELE +
Sbjct: 419 RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAM 478
Query: 110 KAGIELAVQYGFRKAIVATDSLTVHGLLTKLGVKPPWKSFFLWQQIKSLMGVLEQCI-VK 168
+ + ++ + I +DS + +L + P K I+ L +L Q VK
Sbjct: 479 RWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKP-----TIQDLQRLLSQFTEVK 533
Query: 169 HVF--RETNSVADLLSRAHLG 187
VF RE N++A+ ++R L
Sbjct: 534 FVFIPREGNTLAERVARESLS 554