BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000066.1_g0570.1
         (538 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...    47   7e-06

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 13/124 (10%)

Query: 241 SSCVFQDPTTTRTIGLGDLHDGLYHFRTEPRIFSSFLSSSSS-SFDLWHWRLGHPSLERL 299
           S  V +     RTI  G+ HD LY  +       S L+ ++     LWH RL H S   +
Sbjct: 25  SEGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGM 84

Query: 300 SFISSKYPCIKNGLIN--KVP----CDICPLSKQPRLSFPSSTSKSSHIFELIHADIWGP 353
             +      +K G ++  KV     C+ C   K  R++F +    + +  + +H+D+WG 
Sbjct: 85  ELL------VKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGA 138

Query: 354 FNIP 357
            ++P
Sbjct: 139 PSVP 142

Top