BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0580.1
(179 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 100 2e-26
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 44 2e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 100 bits (250), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 5 TESGSDYNPTTPPHSSAIY--DIHHSDSPTTILITPLLSG-DNYASWSRGMKMALRAKDK 61
E+ +PT+ P S DIHH P+ I L DNY +W + LR K
Sbjct: 2 AETIKSVSPTSDPDSPYYLPPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKK 58
Query: 62 FGFVDGSISKPTTPVDLHA-WERCNDLVSSWLVNSVSPDLRQSILYDESAAEIWTNLYDR 120
FGF+DG++ KP L+ WE+CN +V WL+NS++ L +S++Y E+A ++W +L
Sbjct: 59 FGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRV 118
Query: 121 FHQTNAPNFFQLKRAISSMKQDGLDVSTYFTNLKSHQDELQSLLAIEPCQCG 172
F +QL+R +++++Q G V YF L EL I C+CG
Sbjct: 119 FVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCG 170
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 34 ILITPLLSGDNYASWSRGMKMALRAKDKFGFVDGSISKPTTPVDLHAWERCNDLVSSWLV 93
I +T L+ NY W + + G +DGS S PT P+ W+ + LV W+
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79
Query: 94 NSVSPDLRQSIL-YDESAAEIWTNLYDRFHQTNAPNFFQLKRAISSMKQDGLDVSTYFTN 152
+++ L +I+ +A ++W +L + F Q + + + D L V Y
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 153 LKSHQDELQSL 163
LKS D L ++
Sbjct: 140 LKSLSDLLTNV 150