BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0690.1
(285 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 90 3e-20
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 78 2e-16
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 72 1e-14
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 89.7 bits (221), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 42/273 (15%)
Query: 18 IPIKLQSNSYLAWKSIFLPILKKYKVLDLIDGT-RPCPNKFIDEDREIINQDYINWMDED 76
+ + L +Y W+ +F + + VL IDG+ P P + E R W + D
Sbjct: 24 VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTP---MTEKR---------WKERD 71
Query: 77 QTLLIWINSTLSDSVVPYVIGTTTSAQ-LWRNLEESFATSSTAHILQLERQLRDCRKDND 135
+ +WI T++DS++ +I +A+ LW +LE F + A LQ E +LR D+
Sbjct: 72 GLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDL 131
Query: 136 TISEYLSKIKQICDNLAAAGSPASSKEVIVSILSGLPSEFDAFSTSIRIRNPPVTVNELY 195
++ EY K+K + D L SP S + +++ +L+GL ++D I+ ++P + E
Sbjct: 132 SVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEAR 191
Query: 196 NLLLSEE----ITLSDKMKKMNISSDSHVLMTSNFAGNSQNKNNYQHKFQDNNSYQGKSF 251
++LL EE + N S S+VL T + + Y ++ +NNS
Sbjct: 192 SMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTV-----PRQQERYPQEYHNNNS------ 240
Query: 252 NSGSSNRNGFNHNNSGRGSGNFRGKGGGNSSFR 284
N GRG + +GGG+S R
Sbjct: 241 -------------NMGRGRSKKKNRGGGSSDGR 260
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 78.2 bits (191), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 128/280 (45%), Gaps = 39/280 (13%)
Query: 11 INSMGNAIPIKL--QSNSYLAWKSIFLPILKKYKVLDLIDGTRPCPNKFIDEDREIINQD 68
++++ + IP+ L + ++Y AW+ +FL + V+ IDGT P N +
Sbjct: 13 VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-LPT----------NAN 61
Query: 69 YINWMDEDQTLLIWINSTLSDSVVP-YVIGTTTSAQLWRNLEESFATSSTAHILQLERQL 127
+NW D + + + TL+ + ++TS +W ++ F + A L+L+ +L
Sbjct: 62 DVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSEL 121
Query: 128 RDCRKDNDTISEYLSKIKQICDNLAAAGSPASSKEVIVSILSGLPSEFDAFSTSIRIRNP 187
R + +++Y K+K++ D+L P + + +++ +L+GL +FD I+ R P
Sbjct: 122 RTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQP 181
Query: 188 PVTVNELYNLLLSEEITLSDKMK----KMNISSDSHVLMTSNFAGNSQNKNNYQHKFQDN 243
+ ++ +L EE L +K ++ SS S VL S + N+Q +
Sbjct: 182 FPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACS----EAPPVTNFQRSGGNQ 237
Query: 244 NSYQGKSFNSGSSNRNGFNHNNSGRGSGNFRGKGGGNSSF 283
Y+G+ GRG+ FRG+GG S +
Sbjct: 238 MGYRGR-----------------GRGNNIFRGRGGRFSYY 260
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 30/199 (15%)
Query: 25 NSYLAWKSIFLPILKKYKVLDLIDGTRPCPNKFIDEDREIINQDYINWMDEDQTLLIWIN 84
++Y+AWK F L+ K IDGT P P+ F + Y W + ++ W+
Sbjct: 40 DNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF--------SPLYQPWEQCNAMVMYWLM 91
Query: 85 STLSDSVVPYVIGTTTSAQLWRNLEESFATSSTAHILQLERQLRDCRKDNDTISEYLSKI 144
++++D ++ V+ T+ ++W +L F I QL R+L R+ D++ EY K+
Sbjct: 92 NSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKL 151
Query: 145 KQI-------------------CDNLAAAGSPASSKEVIVSILSGLP--SEFDAFSTSIR 183
++ C+ A A KE L GL F+A +T I
Sbjct: 152 SKVWMELSEYAPIPECKCGGCNCECTKRAEE-AREKEQRYEFLMGLKLNQGFEAVTTKIM 210
Query: 184 IRNPPVTVNELYNLLLSEE 202
+ PP +++E + ++ E
Sbjct: 211 FQKPPPSLHEAFAMVKDAE 229