BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0710.1
(568 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 169 2e-45
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 97 4e-21
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 90 2e-19
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 83 7e-17
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 81 3e-16
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 169 bits (428), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/546 (26%), Positives = 245/546 (44%), Gaps = 55/546 (10%)
Query: 32 LPKGISDSIESIQRTYWW---GKSKTFHTINWNSICKPRNQGGLGLRLPQLDNQAFLHKL 88
LPK + I S+ +WW ++K H W+ + + +GG+G + + N A L K
Sbjct: 13 LPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQ 72
Query: 89 NWRIVKNPEAIWVQVLKGKYFHNS---HKPTQSKNHHSWPWKSISKHYHQIDSLIFWSIN 145
WR++ PE++ +V K +YFH S + P S+ S+ WKSI + +
Sbjct: 73 MWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSR--PSFVWKSIHASQEILRQGARAVVG 130
Query: 146 KGEHINIWTDYWILNHP----------PPIANDRGCTFEKVSQLI--TNGTWNLNLINMC 193
GE I IW W+ + P PP + KVS LI + W ++I M
Sbjct: 131 NGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEML 190
Query: 194 VDNDFCSSILSINLNPNEE---DKAICPLTKSGNFSLKCMYNFL------RNNTIYNTQN 244
L L P D T SG++++K Y L R++ ++
Sbjct: 191 FPE--VERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEP 248
Query: 245 QMDWFF--IWNMNTIPRIKLFLWKCCTNSLPVRAKIG-KFIGNNYSCVNCNE-DETLDHV 300
++ + IW T P+I+ FLWKC +NSLPV + + + +C+ C ET++H+
Sbjct: 249 SLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHL 308
Query: 301 MLHCSFAKAIWFHFNIR-------TDTISTTTQWIHQW---KPLEEESINLYAKILWFLW 350
+ C+FA+ W +I D+I W+ P E++ L +LW LW
Sbjct: 309 LFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLW 368
Query: 351 KARCENCLTTNKQNPSQMIERI---INTTTTPLRIESSIIKKCKEKTNTQTWSPPSTPYI 407
K R E + N +++ R + ES K +++ W PP ++
Sbjct: 369 KNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWV 428
Query: 408 KINVDASFISLNEQAGIGYIIRD--AEANYILAVADIVRGQHAEECESLAILSSLQGAMQ 465
K N DA++ NE+ GIG+++R+ E ++ A A + + + E E A+ ++ +
Sbjct: 429 KCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA-LPKLKSVLEAELEAMRWAVLSLSR 487
Query: 466 LQIPYVHLESDNQAIILALNGKGVNLHWQSQR-IIQQIKDIKDKFTGIIFTHISRNCNTY 524
Q YV ESD+Q +I LN + W S + IQ ++ + +FT + F I R NT
Sbjct: 488 FQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTL 544
Query: 525 ADALAK 530
A+ +A+
Sbjct: 545 AERVAR 550
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 111/485 (22%), Positives = 203/485 (41%), Gaps = 51/485 (10%)
Query: 104 LKGKYFHN-SHKPTQSKNHHSWPWKSISKHYHQIDSLIFWSINKGEHINIWTDYWILNHP 162
+K +YF + S + + S+ W S+ + I G++I I D + +HP
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 163 P-PIANDRGCTFEKVSQLITNGT----WNLNLINMCVDNDFCSSILSINLNPNEE-DKAI 216
P P+ + ++ L W+ + I+ VD I I L +++ DK I
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 217 CPLTKSGNFSLKCMYNFLRNNTIYN------TQNQMDW-FFIWNMNTIPRIKLFLWKCCT 269
+G ++++ Y L ++ N +D IWN+ +P++K FLW+ +
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 270 NSLPVRAKIG-KFIGNNYSCVNCN-EDETLDHVMLHCSFAKAIW-----------FHFNI 316
+L ++ + + + SC C+ E+E+++H + C FA W N
Sbjct: 181 QALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSND 240
Query: 317 RTDTISTTTQWIHQWKPLEEESINLYAKIL-----WFLWKARCENCLTTNKQNPSQMIER 371
+ IS ++ ++ +++ + K+L W +WKAR +++PS+ +
Sbjct: 241 FEENISNILNFV------QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLS 294
Query: 372 I-------INTTTTPLRIESSIIKKCKEKTNTQTWSPPSTPYIKINVDASFISLNEQAGI 424
+N T + + S + + K W P Y+K N DA F +A
Sbjct: 295 AKAETHDWLNATQSHKKTPSPTRQIAENKIE---WRNPPATYVKCNFDAGFDVQKLEATG 351
Query: 425 GYIIRDAEANYIL-AVADIVRGQHAEECESLAILSSLQGAMQLQIPYVHLESDNQAIILA 483
G+IIR+ I + + E E+ A+L++LQ V +E D Q +I
Sbjct: 352 GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINL 411
Query: 484 LNGKGVNLHWQSQRIIQQIKDIKDKFTGIIFTHISRNCNTYADALAKWGRTHGHCNTYAD 543
+NG ++ H ++ I +KF I F I R N A LAK+G T+ + +
Sbjct: 412 ING--ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSG 469
Query: 544 ALAKW 548
+L W
Sbjct: 470 SLPIW 474
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 137/291 (47%), Gaps = 24/291 (8%)
Query: 257 IPRIKLFLWKCCTNSLPVRAK-IGKFIGNNYSCVNCNEDETLDHVMLHCSFAKAIWFHFN 315
+P+IKLFLWK +LPV A+ + + I + + C C ET H++ HC FA +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 316 IRTDTISTTTQWIHQ---------WKPLEEESINLYAKILWFLWKARCENCLTTNKQNPS 366
++ I T + P+ + L+ I W +WKAR N L + S
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKAR--NQLIFQNSHFS 118
Query: 367 QMIERIINTTTTPLRIESSIIKKCKEKTNTQTWSPPSTPYIKIN----VDASFISLNEQA 422
+IE + L +S+ + K T P ST + + VDA++ + A
Sbjct: 119 -VIETVTKAVQDALAWQSA--QLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQSSLA 175
Query: 423 GIGYIIRD---AEANYILAVADIVRGQHAEECESLAILSSLQGAMQLQIPYVHLESDNQA 479
G G++ + +E A R E+ AI S++ A+QL+ + + SD+++
Sbjct: 176 GSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKS 235
Query: 480 IILALNGKGVNLHWQSQRIIQQIKDIKDKFTGIIFTHISRNCNTYADALAK 530
I+ ALN V+L+ + ++ +I+ I+++F I F I R N+ ADA AK
Sbjct: 236 IVDALNSN-VSLN-EIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAK 284
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 129/306 (42%), Gaps = 34/306 (11%)
Query: 251 IWNMNTIPRIKLFLWKCCTNSLPVRAKI-GKFIGNNYSCVNCN-EDETLDHVMLHCSFAK 308
IW ++ P+IK FLW+C T +L ++ + I + C C E+ET+ H+M +C + +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 309 AIWFHFNIRTDTISTTTQW-------------IHQWKPLEEESINLYAK--ILWFLWKAR 353
++W R+ I QW I K S++ + I+W LWK+R
Sbjct: 97 SVW-----RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSR 151
Query: 354 CENCLTTNKQNPSQMIERII---------NTTTTPLRIESSIIKKCKEKTNTQTWSPPST 404
Q+P + I N TT + + + ++ W+PP
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPE 211
Query: 405 PYIKINVDASFISLNEQAGIGYIIRDAEANYIL-AVADIVRGQHAEECESLAILSSLQGA 463
++K N D+ + + G+ IR+ + +L A + + E+L L +LQ
Sbjct: 212 GWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVI 271
Query: 464 MQLQIPYVHLESDNQAIILALNGKGVNLHWQSQRIIQQIKDIKDKFTGIIFTHISRNCNT 523
+ YV ESD+++++ +N H +I I+ K ++R N+
Sbjct: 272 WAHGLRYVWFESDSKSLVTLINNG--EDHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNS 329
Query: 524 YADALA 529
ADALA
Sbjct: 330 AADALA 335
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 132/307 (42%), Gaps = 35/307 (11%)
Query: 251 IWNMNTIPRIKLFLWKCCTNSLPVRAKIGK-FIGNNYSCVNC-NEDETLDHVMLHCSFAK 308
IW + T P+IK FLWK + +L + + I N+ C C EDET H+ C +A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 309 AIWF-----HFNIRTDTISTTTQW-------IHQWKPLEEESINLYAKILWFLWKARCEN 356
+W H +RT I+ T+ + +P + NL ILW LWK+R +
Sbjct: 78 QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQP---QLFNLAIWILWRLWKSRNQL 134
Query: 357 CLTTNKQNPSQMIERIIN------TTTTPLRIESSIIKKCKEKTNTQT---WSPPSTPYI 407
+ ++R N T T ++ + + + + T W P + +I
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWI 194
Query: 408 KINVDASFISLNEQAGIGYIIRDAEANYILAVADI-VRGQHAEECESLAILSSLQGAMQL 466
K N D +F A G+++RD Y+ + I + E E A++ ++Q A
Sbjct: 195 KYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQ 254
Query: 467 QIPYVHLESDNQAIILALNGKGVN---LHWQSQRIIQQIKDIKDKFTGIIFTHISRNCNT 523
V E D++ + +N + +N +W I++ + + +F +F + R N
Sbjct: 255 GYRKVIFEGDSKQVEELMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQ 309
Query: 524 YADALAK 530
AD LAK
Sbjct: 310 PADILAK 316