BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0770.1
(550 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 73 9e-14
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 73 1e-13
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 65 2e-11
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 47 5e-06
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 20 SIANIASFVSEKLD--GSNFLIWKDQFEAILISTDLFGFVDGSIVPPVKSIIENNHEIPN 77
++NI S + LD SN+ W++ F +S D+ G +DG+++P N +++
Sbjct: 12 GVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLP------TNANDV-- 63
Query: 78 PLYLQWRKTDNFVKSCMKATFT-HSISSDVLGLQTSREIWSYLEQNYVEEYEAKIASLRE 136
W+K D VK + T T + TSR+IW ++ + +A+ L
Sbjct: 64 ----NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDS 119
Query: 137 QIQTIKKGDSSTTEYLRKIKVLSDSLIAVNDRLSDKELSRIVLKG 181
+++T GD +Y RK+K L+DSL V+ ++D+ L VL G
Sbjct: 120 ELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNG 164
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 27 FVSEKLDGSNFLIWKDQFEAILISTDLFGFVDGSIVPPVKSIIENNHEIPNPLYLQWRKT 86
FV+ L+ N+ +W++ FE + +S + G +DGS P + E +W++
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTP--TPMTEK----------RWKER 70
Query: 87 DNFVKSCMKATFTHSISSDVLGLQ-TSREIWSYLEQNYVEEYEAKIASLREQIQTIKKGD 145
D VK + T T S+ ++ + T+R++W LE + + EA+ +++T D
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 146 SSTTEYLRKIKVLSDSLIAVNDRLSDKELSRIVLKG 181
S EY +K+K LSD L V+ +SD+ L +L G
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNG 166
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 11 SPNLSSPNTSIANIASFVSEKL--DGSNFLIWKDQFEAILISTDLFGFVDGSIVPPVKSI 68
SP P+ I + + F +KL D N++ WK +F + L T FGF+DG++ P
Sbjct: 16 SPYYLPPD--IHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---- 69
Query: 69 IENNHEIPNPLYLQWRKTDNFVKSCMKATFTHSISSDVLGLQTSREIWSYLEQNYVEEYE 128
+ +PLY W + + V + + T + V+ +T+ ++W L + +V +
Sbjct: 70 -----DPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVD 124
Query: 129 AKIASLREQIQTIKKGDSSTTEYLRKI 155
KI LR ++ T+++G S EY K+
Sbjct: 125 LKIYQLRRRLATLRQGGDSVEEYFGKL 151
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 460 IWHTRLGHTSDAIIHLLSRNKLISVLDKPSKSLCHPCSIAKSKLLPFPISDSYTESPLYL 519
+WH+RL H S + LL + + S C C K+ + F T++PL
Sbjct: 71 LWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDY 130
Query: 520 IHCDIWGPSPHVTLN 534
+H D+WG +P V L+
Sbjct: 131 VHSDLWG-APSVPLS 144