BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000066.1_g0850.1
         (105 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    79   5e-19

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
           Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 79.0 bits (193), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 10  KLGFINGSIPKPSSASELHS-WERCNDFVDIWIVNSVAQDIRSSILYDDNAANIWRNLHD 68
           K GFI+G++PKP   S L+  WE+CN  V  W++NS+   +  S++Y + A  +W +L  
Sbjct: 58  KFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRR 117

Query: 69  RFFQTNVPKIYQLKRAIFSYKQEGNDVSSYFTHL 102
            F      KIYQL+R + + +Q G+ V  YF  L
Sbjct: 118 VFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKL 151

Top