BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g0870.1
(826 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53670.1 | transmembrane protein | Chr5:21796997-21797731 FOR... 98 2e-22
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 57 3e-09
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 54 2e-08
>AT5G53670.1 | transmembrane protein | Chr5:21796997-21797731
FORWARD LENGTH=244 | 201606
Length = 244
Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 120/214 (56%), Gaps = 27/214 (12%)
Query: 1 MNNIPVLNGTNFKKWKNHVMIVLGCMDLDVALRTDRPAPLTDLSNSEQGVAFEKWERSDR 60
+++IP+L+G+NF +WK H+++VL MDLD++L T+RP+ +L + W+RS+R
Sbjct: 35 VDSIPMLSGSNFSEWKEHLLLVLALMDLDLSLMTERPSSPKELKH---------WDRSNR 85
Query: 61 MSLMIMQNSIPDSISSGLTE--TSAKEFLKQLSDRFTASEKVEISTALAKLVTMRYKGKR 118
+S+MIM+ IP + + T+AK+FL L + F +E+ E S A+ +M Y
Sbjct: 86 VSIMIMKIRIPQGFRGVVPDDVTTAKDFLASLENFFAKNEEAERSRVQAESSSMSYIENE 145
Query: 119 NIREYIMEKSNLVSKLRELRLK--LSDD-ILVHLILISLPAQYNTLKISYNTQKDK---- 171
N+RE IM L +K + L + S+D +L H + LP QY +LK Y+ + K
Sbjct: 146 NVRELIMRMKTLGAKRKRLGINNIFSNDMMLAHCAVKMLPLQYISLKNVYSCLEGKFVNE 205
Query: 172 ---------WSLNELIAQCVQEEERINREMSESA 196
WS ELI++C EEE + E+++ A
Sbjct: 206 NGRWHTGEIWSTKELISRCDMEEETLRTEIADEA 239
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 344 SFGNGLFSISLKSDIVGTGNLIDKLYLLNTIKSNCDENLHISTLGTKRRLANENSSILWH 403
S G+ + + GN D LY+L + NL + ++ + LWH
Sbjct: 23 SCSEGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETA---------KDETRLWH 73
Query: 404 KRLGHISQERIKRLVSEGILDSLNDSEYKICIECVKGKQTNKR-GKGAYRATQPLELIHT 462
RL H+SQ ++ LV +G LDS S K C +C+ GK G + PL+ +H+
Sbjct: 74 SRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHS 133
Query: 463 DICG 466
D+ G
Sbjct: 134 DLWG 137
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 575 NRTLKDMVRSMISHSSLPESLWGDALKTTVYILNRVPSKAIT-KTPYELWTGKKPNIRHL 633
NRT+ + VRSM+ LP++ DA T V+I+N+ PS AI P E+W P +L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 634 HVWGCPA 640
+GC A
Sbjct: 62 RRFGCVA 68