BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1010.1
(526 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 133 2e-33
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 133 3e-33
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 133 3e-33
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 119 7e-30
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 124 2e-29
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 133 bits (334), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 161/344 (46%), Gaps = 28/344 (8%)
Query: 2 NKAANMRHVWDIISGKKTLWVEWVQKNLVKGRNFWEIKAPSD-SSWCWRSILMERIDAKN 60
NK + ++ +W ++S +LWV+W++ L++ +FW I + SW W+ IL R A
Sbjct: 139 NKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 197
Query: 61 MVHHIIGNGEDTKFWDDPWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWVIPAHL 120
V H I NG +T FW D W +G L D + ++ V+ +++ P
Sbjct: 198 FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRH 254
Query: 121 RVMLGDIANRIEEVLID------NSEVDTVVWKCNKD---GVYSMKDTYNFLRPTKEKVG 171
R D RIE+V+ + S DTV WK N D ++ K+T+ R K KV
Sbjct: 255 R---HDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVN 311
Query: 172 WASIIWFKDMIPRHSFIGWLVIQQRLKTKVKLLNWGLDIDPKCCLCQNGMEGELHLFTQC 231
W +WF P++S + W+ I+ RL T ++L+W D C LC + +E HLF C
Sbjct: 312 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 371
Query: 232 SYAREVWVRIT-QLIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAF---LYHI 287
Y+ EVW +T +L+ H + WE I+ +S + + L F L+ +
Sbjct: 372 PYSAEVWSTLTRKLLSQH--FTNRWEA----ILKLLTNKSLGHEVPFLTRYTFQLTLHSL 425
Query: 288 WGERNRRMSKAKLLPAESVFWKIFNEVRLKVAGAEIKVVDNPYN 331
W ERN R A + + +VR +++ + + D YN
Sbjct: 426 WKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQ-EDRRYN 468
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 133 bits (334), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 161/344 (46%), Gaps = 28/344 (8%)
Query: 2 NKAANMRHVWDIISGKKTLWVEWVQKNLVKGRNFWEIKAPSD-SSWCWRSILMERIDAKN 60
NK + ++ +W ++S +LWV+W++ L++ +FW I + SW W+ IL R A
Sbjct: 193 NKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 251
Query: 61 MVHHIIGNGEDTKFWDDPWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWVIPAHL 120
V H I NG +T FW D W +G L D + ++ V+ +++ P
Sbjct: 252 FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRH 308
Query: 121 RVMLGDIANRIEEVLID------NSEVDTVVWKCNKD---GVYSMKDTYNFLRPTKEKVG 171
R D RIE+V+ + S DTV WK N D ++ K+T+ R K KV
Sbjct: 309 R---HDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVN 365
Query: 172 WASIIWFKDMIPRHSFIGWLVIQQRLKTKVKLLNWGLDIDPKCCLCQNGMEGELHLFTQC 231
W +WF P++S + W+ I+ RL T ++L+W D C LC + +E HLF C
Sbjct: 366 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 425
Query: 232 SYAREVWVRIT-QLIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAF---LYHI 287
Y+ EVW +T +L+ H + WE I+ +S + + L F L+ +
Sbjct: 426 PYSAEVWSTLTRKLLSQH--FTNRWEA----ILKLLTNKSLGHEVPFLTRYTFQLTLHSL 479
Query: 288 WGERNRRMSKAKLLPAESVFWKIFNEVRLKVAGAEIKVVDNPYN 331
W ERN R A + + +VR +++ + + D YN
Sbjct: 480 WKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQ-EDRRYN 522
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 133 bits (334), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 161/344 (46%), Gaps = 28/344 (8%)
Query: 2 NKAANMRHVWDIISGKKTLWVEWVQKNLVKGRNFWEIKAPSD-SSWCWRSILMERIDAKN 60
NK + ++ +W ++S +LWV+W++ L++ +FW I + SW W+ IL R A
Sbjct: 193 NKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 251
Query: 61 MVHHIIGNGEDTKFWDDPWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWVIPAHL 120
V H I NG +T FW D W +G L D + ++ V+ +++ P
Sbjct: 252 FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRH 308
Query: 121 RVMLGDIANRIEEVLID------NSEVDTVVWKCNKD---GVYSMKDTYNFLRPTKEKVG 171
R D RIE+V+ + S DTV WK N D ++ K+T+ R K KV
Sbjct: 309 R---HDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVN 365
Query: 172 WASIIWFKDMIPRHSFIGWLVIQQRLKTKVKLLNWGLDIDPKCCLCQNGMEGELHLFTQC 231
W +WF P++S + W+ I+ RL T ++L+W D C LC + +E HLF C
Sbjct: 366 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 425
Query: 232 SYAREVWVRIT-QLIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAF---LYHI 287
Y+ EVW +T +L+ H + WE I+ +S + + L F L+ +
Sbjct: 426 PYSAEVWSTLTRKLLSQH--FTNRWEA----ILKLLTNKSLGHEVPFLTRYTFQLTLHSL 479
Query: 288 WGERNRRMSKAKLLPAESVFWKIFNEVRLKVAGAEIKVVDNPYN 331
W ERN R A + + +VR +++ + + D YN
Sbjct: 480 WKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSIQSQ-EDRRYN 522
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 119 bits (298), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 112/236 (47%), Gaps = 10/236 (4%)
Query: 66 IGNGEDTKFWDDPWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWVIPAHLR--VM 123
+GNGE FW D W G L + + + ++++V +G+W +PA
Sbjct: 16 MGNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQ 75
Query: 124 LGDIANRIEEVLIDNSEVDTVVWKCNKDGVY----SMKDTYNFLRPTKEKVGWASIIWFK 179
L A + V ++ D+ +W+ N G Y S +DT+ +R V WA ++WFK
Sbjct: 76 LFLAALTMAPVPHESRGQDSFLWR-NAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFK 134
Query: 180 DMIPRHSFIGWLVIQQRLKTKVKLLNWGLDIDPKCCLCQNGMEGELHLFTQCSYAREVWV 239
+ IPR S I W+ +RL T+ +L WG++I LC NG E HLF +CS++ +W
Sbjct: 135 EYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWE 194
Query: 240 RITQLIGCHARVFSGWEEYIGWIINFFKGESSSNNLKKLLVIAFLYHIWGERNRRM 295
G WI+ S S + KLL+ + +YH+W ERN R+
Sbjct: 195 FFASKFRPSPPF--GLPAASSWILQ-LPLRSHSTTILKLLLQSAVYHVWKERNARI 247
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 17/246 (6%)
Query: 2 NKAANMRHVWDIISGKKTLWVEWVQKNLVKGRNFWEIKAPSD-SSWCWRSILMERIDAKN 60
NK + ++ +W ++S +LWV+W++ L++ +FW I + SW W+ IL R A
Sbjct: 193 NKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 251
Query: 61 MVHHIIGNGEDTKFWDDPWHPLGCLSSRFNTSFMYDSTLHRNSKVSSCIMDGNWVIPAHL 120
V H I NG +T FW D W +G L D + ++ V+ +++ P
Sbjct: 252 FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR---PRRH 308
Query: 121 RVMLGDIANRIEEVLID------NSEVDTVVWKCNKD---GVYSMKDTYNFLRPTKEKVG 171
R D RIE+V+ + S DTV WK N D ++ K+T+ R K KV
Sbjct: 309 R---HDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVN 365
Query: 172 WASIIWFKDMIPRHSFIGWLVIQQRLKTKVKLLNWGLDIDPKCCLCQNGMEGELHLFTQC 231
W +WF P++S + W+ I+ RL T ++L+W D C LC + +E HLF C
Sbjct: 366 WYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTC 425
Query: 232 SYAREV 237
Y+ EV
Sbjct: 426 PYSAEV 431