BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1050.1
(108 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 118 5e-32
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 118 5e-32
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 45 7e-07
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 118 bits (295), Expect = 5e-32, Method: Composition-based stats.
Identities = 57/101 (56%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 12 RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIQVLLSIVAHGDLELEQLDVKTAFLHGDL 71
RYKARLVAKGY Q+EG+D+ E FSPV K TS++++L+I A + L QLD+ AFL+GDL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 72 EEEIYMAQPEGYKVEDKE----NQVCRLRKSLYGLKQSPRQ 108
+EEIYM P GY + N VC L+KS+YGLKQ+ RQ
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQ 245
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 118 bits (295), Expect = 5e-32, Method: Composition-based stats.
Identities = 57/101 (56%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 12 RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIQVLLSIVAHGDLELEQLDVKTAFLHGDL 71
RYKARLVAKGY Q+EG+D+ E FSPV K TS++++L+I A + L QLD+ AFL+GDL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 72 EEEIYMAQPEGYKVEDKE----NQVCRLRKSLYGLKQSPRQ 108
+EEIYM P GY + N VC L+KS+YGLKQ+ RQ
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQ 245
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 45.4 bits (106), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 12 RYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIQVLLSI 49
R KARLVAKG+ Q+EG+ + E +SPVV+ +I+ +L++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124