BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1180.1
(287 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 44 3e-05
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 207 GSIKVVKGSLVVMRGTRYGNLYSLLGTTITGDVAVGISRRDPTASTRFWHMRLGAYVRKG 266
G +KV+KG +++G R+ +LY L G+ TG+ + + +D TR WH RL ++G
Sbjct: 27 GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRG 83
Query: 267 FIFDVRE 273
V++
Sbjct: 84 MELLVKK 90