BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1240.1
(156 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09775.1 | non-LTR retroelement reverse transcriptase | Chr4:... 48 2e-07
AT5G42905.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 45 6e-06
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 43 4e-05
>AT4G09775.1 | non-LTR retroelement reverse transcriptase |
Chr4:6156629-6157054 FORWARD LENGTH=141 | 201606
Length = 141
Score = 47.8 bits (112), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 20 LWEWWKCRNAFVFNN----------KPIDDNRCWVSTKITLSSLPTFNPISQTNPSCMLQ 69
+W WK RN F+F K + WV T T++ + Q N +
Sbjct: 1 MWRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVET--TINDTANSHSTEQPNDRPSGR 58
Query: 70 VEQWSPPPQGQYEINTDGSF---RDNGGSTAAVVRDSMNNIIFSAATTFKL-ISPLHSEI 125
++WSPPP+G + N D + RD ST ++RDS ++I S + S L +E
Sbjct: 59 SKEWSPPPEGYLKCNFDSGYVQGRDY-TSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA 117
Query: 126 KGVLLGLESAELLG 139
G L L+ + G
Sbjct: 118 LGFLHALQMVWIRG 131
>AT5G42905.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr5:17201414-17202323 REVERSE
LENGTH=258 | 201606
Length = 258
Score = 45.1 bits (105), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 9 EDRLWFTYTSLL--WEW-WKCRNAFVFNNKPIDDNRCWVSTKITLSSLPTFNPISQTNPS 65
ED W T +++ W W W+C N F N K D + + + N + +
Sbjct: 73 EDIPWSTIFAVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVVEVYRAHLGNALVGSTQP 132
Query: 66 CMLQVEQWSPPPQGQYEINTDGSFRDNGG--STAAVVRDSMNNIIFSAATTFKLISPLHS 123
+ ++ W P G ++NTDG+ R N G S V+RD + S H+
Sbjct: 133 RVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHA 192
Query: 124 EIKGVLLGLESAELLGIDGFILELDSRVFWEFL 156
E+ GV GL A + LE+DS FL
Sbjct: 193 ELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFL 225
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 18/147 (12%)
Query: 19 LLWEWWKCRNAFVFNN----------KPIDDNRCWVSTKITLSSLPTFNPISQTNP--SC 66
++W WK RN F+F K I D W++ T + N TNP +
Sbjct: 143 IMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENT---NVHVATNPIQTS 199
Query: 67 MLQVEQWSPPPQGQYEINTDGSFRDNGGSTAA--VVRDSMNNIIFSAATTFK-LISPLHS 123
QW+PPP+G + N D + T + +R+ +I+ + LH+
Sbjct: 200 RRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHA 259
Query: 124 EIKGVLLGLESAELLGIDGFILELDSR 150
E G L L+ G+ E DS+
Sbjct: 260 EALGFLHALQVIWAHGLRYVWFESDSK 286