BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1260.1
(328 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 54 7e-09
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 54.3 bits (129), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 95 GNLIDKLYLLNTIKSNCDENLHISTLGTKRRLANENSSILWHKRLGHISQERIQRLVSEG 154
GN D LY+L + NL + ++ + LWH RL H+SQ ++ LV +G
Sbjct: 41 GNRHDSLYILQGSVETGESNLAETA---------KDETRLWHSRLAHMSQRGMELLVKKG 91
Query: 155 ILDSLNDSEYKICIERVKGKQTNKR-GKGAYRATQPLDLIHTDICGS 200
LDS S K C + + GK G + PLD +H+D+ G+
Sbjct: 92 FLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGA 138