BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1340.1
(476 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 103 6e-25
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 103 bits (257), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 12 IHSTPTHRVTSVLLNGKNFHAWSRSFHLYLGGKRKTGWILGNVPQPAETDTRFDQWDADN 71
IH + + + N+ AW F +L +K G+I G +P+P + W+ N
Sbjct: 24 IHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCN 83
Query: 72 CIILGWMFNSMEDHIYNMFMHHNTVYGLWTALTKTYAHARCDSRVFELNRDISHASQEAL 131
+++ W+ NSM D + M+ T + +W L + + D ++++L R ++ Q
Sbjct: 84 AMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPC-VDLKIYQLRRRLATLRQG-- 140
Query: 132 GISVAGFFGYLQTRWEELAQYEPLSDFPSDA-------KVESKRLDRRHTYQFLMGLKPE 184
G SV +FG L W EL++Y P+ + + E R ++ Y+FLMGLK
Sbjct: 141 GDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAR-EKEQRYEFLMGLKLN 199
Query: 185 --FESLRTQILNTSPMPSLYEAFATV 208
FE++ T+I+ P PSL+EAFA V
Sbjct: 200 QGFEAVTTKIMFQKPPPSLHEAFAMV 225