BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1400.1
(201 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 122 2e-35
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 122 bits (306), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 48 HLRVVLQILRDQQLYAKYTKCEFWLAEVKFLGH--VVNREGISVDPDKVRAVLEWPKPKT 105
HL +VLQI Q YA KC F ++ +LGH +++ EG+S DP K+ A++ WP+PK
Sbjct: 3 HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62
Query: 106 QTEIRSFLGLAGYYRRFIEEFSKIARPLTQLTRKYVKVDLTEECDEAFQDLKNKLTLAPV 165
TE+R FLGL GYYRRF++ + KI RPLT+L +K + TE AF+ LK +T PV
Sbjct: 63 TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPV 121
Query: 166 LILPKLR 172
L LP L+
Sbjct: 122 LALPDLK 128