BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1500.1
(399 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 95 1e-22
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 90 5e-20
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 87 9e-20
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 87 4e-19
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 84 1e-17
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 95.1 bits (235), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 10/201 (4%)
Query: 2 LGTIAVEAREVVVDSTLRDEVVWTPSQNGEFTLKETYEVVRPKGTRLSWTSLVWSPGGIP 61
+G+ +++ + + + D VV NG F+ +T+ +RP+ +SW VW G P
Sbjct: 1 MGSFSIDLPTLSGELDVYDWVVEDKLCNG-FSSAKTWAALRPRSDVVSWAKTVWFKGATP 59
Query: 62 KHCFITWLACRRRLKTRSLLASWGMIIDTTCVFRGGDEETDFHLFFGCSVTKIIWESLLL 121
KH F W+ RL T++ LASWGM + TTC D E HLF C +W ++ +
Sbjct: 60 KHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSV 119
Query: 122 KMGFQRVCVADWEGELQWCI--NHFGGPFIAARVGRMLLNAYVYHIWKERNNRVFRSNVM 179
++ W + W + N P + ++++ + +Y IWK+RNN + +
Sbjct: 120 RLELPAFSFVVWNDLMDWTLQRNRRSPP----TLRKLIVQSVLYAIWKQRNNFLHNHETI 175
Query: 180 SPGLIIHTICDEVRIKLNTVT 200
P ++ TI E++ N++T
Sbjct: 176 LPSVVFKTIDREIK---NSIT 193
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 90.1 bits (222), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 32 FTLKETYEVVRPKGTRLSWTSLVWSPGGIPKHCFITWLACRRRLKTRSLLASWGMIIDTT 91
F+ T++ +RP+ L W VW G +PKH F W++ RL TR LASWG I
Sbjct: 109 FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFD 168
Query: 92 CVFRGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVC-----VADWEGELQWC-INHFG 145
C + E+ HL F C +W ++ F R+C W L W +
Sbjct: 169 CCLCTIETESRDHLLFSCEFAAQVW-----RLAFSRLCPRQRLFCSWAELLSWMRSSSSS 223
Query: 146 GPFIAARVGRMLLNAYVYHIWKERNNRVFRSNVMSPGLIIHTICDEVRIKLNTVTKRFE 204
P + +V +A +Y+IW++RNN + + ++P +I + E+R N ++ R+
Sbjct: 224 APSLLRKVS---AHAIIYNIWRQRNNVLHNNLRIAPIIIFKIVDREIR---NIISSRYH 276
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 87.4 bits (215), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 28 QNGEFTLKET--YEVVRPKGTRLSWTSLVWSPGGIPKHCFITWLACRRRLKTRSLLASWG 85
+N E L+ T + + P G R+ W +W G IPKH FI W+ R RL T+ + SWG
Sbjct: 19 RNKEIDLEATATWLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWG 78
Query: 86 MIIDTTCVFRGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCVADWEGELQWCINHFG 145
I C+F +ET HLFF C + +W ++ + +E ++W N
Sbjct: 79 FIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRVHVFPPLL--FEDGIRWLKNPCQ 136
Query: 146 GPFIAARVGRMLLNAYVYHIWKERNNRVFRSNVMSPGLIIHTICDEVRIKLNTVTK 201
+ + R+ +A VY IWKERN R+ S +I I +R L+ +++
Sbjct: 137 DKNVTT-ILRLSHHASVYTIWKERNARLHDSASRPAAALILEIKSVIRCHLDPLSR 191
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 87.4 bits (215), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 6 AVEAREVVVDSTLRDEVVWTPSQNG---EFTLKETYEVVRPKGTRLSWTSLVWSPGGIPK 62
A+ V +S +D +W + F+ ++T+E +R + W +VW IP+
Sbjct: 80 ALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPR 139
Query: 63 HCFITWLACRRRLKTRSLLASWGMIIDTTCVFRGGDEETDFHLFFGCSVTKIIWESLLLK 122
ITW++ RL TR L WGM I ++ V +ET HLFF CS + IWE K
Sbjct: 140 FSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASK 199
Query: 123 M----GFQRVCVADWEGELQWCINHFGGPFIAARVGRMLLNAYVYHIWKERNNRVF 174
F + W +L +H + + ++LL + VYH+WKERN R+F
Sbjct: 200 FRPSPPFGLPAASSWILQLP-LRSH------STTILKLLLQSAVYHVWKERNARIF 248
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 13 VVDSTLRDEVVWTP---SQNGEFTLKETYEVVRPKGTRLSWTSLVWSPGGIPKHCFITWL 69
++D D +W + + F+ T+ + P+ + W VW +PKH FI W+
Sbjct: 89 LLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWV 148
Query: 70 ACRRRLKTRSLLASWGMIIDTTCVFRGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVC 129
RL TR L +WG+ I C+ +++ HLFF C + ++W
Sbjct: 149 VAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP-- 206
Query: 130 VADWEGELQWCINHFGGPFIAARVG---RMLLNAYVYHIWKERNNRVFRSNVMSPGLIIH 186
+L C+N P + R+ ++ VY IW+ERN R+ S I+
Sbjct: 207 ----PAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILK 262
Query: 187 TICDEVRIKLNTVTK 201
I +R +L+ +++
Sbjct: 263 DIQLIIRARLDPLSR 277