BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1560.1
(195 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 48 2e-06
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 48 2e-06
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 48 2e-06
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 46 7e-06
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 46 7e-06
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 14 KYLGAQLFIGAQKTKVFKDILDQIKNKLNRWNHSFLSQAGRTVVISAIAAAVPRYQMQCF 73
+YLG L T + ++++I+ ++ +W LS AGR +IS++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 TIPKEISKSIKSVQRNFWW 92
+P K I S+ +F W
Sbjct: 86 RLPSACIKEIDSICSSFLW 104
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 14 KYLGAQLFIGAQKTKVFKDILDQIKNKLNRWNHSFLSQAGRTVVISAIAAAVPRYQMQCF 73
+YLG L T + ++++I+ ++ +W LS AGR +IS++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 TIPKEISKSIKSVQRNFWW 92
+P K I S+ +F W
Sbjct: 140 RLPSACIKEIDSICSSFLW 158
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 14 KYLGAQLFIGAQKTKVFKDILDQIKNKLNRWNHSFLSQAGRTVVISAIAAAVPRYQMQCF 73
+YLG L T + ++++I+ ++ +W LS AGR +IS++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 TIPKEISKSIKSVQRNFWW 92
+P K I S+ +F W
Sbjct: 140 RLPSACIKEIDSICSSFLW 158
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 14 KYLGAQLFIGAQKTKVFKDILDQIKNKLNRWNHSFLSQAGRTVVISAIAAAVPRYQMQCF 73
+YLG L T + ++++I+ ++ +W LS AGR +IS++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 74 TIPKEISKSIKSVQRNFWW 92
+P K I S+ +F W
Sbjct: 86 RLPSACIKEIDSICSSFLW 104
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 14 KYLGAQLFIGAQKTKVFKDILDQIKNKLNRWNHSFLSQAGRTVVISAIAAAVPRYQMQCF 73
+YLG L T + ++++I+ ++ +W LS AGR +IS++ ++ + M F
Sbjct: 80 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 139
Query: 74 TIPKEISKSIKSVQRNFWW 92
+P K I S+ +F W
Sbjct: 140 RLPSACIKEIDSICSSFLW 158