BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1590.1
(222 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26618.1 | eukaryotic release factor 1-3 | Chr3:9788854-97901... 113 3e-29
AT5G47880.2 | eukaryotic release factor 1-1 | Chr5:19386555-1938... 113 3e-29
AT5G47880.1 | eukaryotic release factor 1-1 | Chr5:19386555-1938... 113 3e-29
AT1G12920.1 | eukaryotic release factor 1-2 | Chr1:4396555-43978... 109 8e-28
>AT3G26618.1 | eukaryotic release factor 1-3 | Chr3:9788854-9790161
FORWARD LENGTH=435 | 201606
Length = 435
Score = 113 bits (283), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 77/141 (54%), Gaps = 47/141 (33%)
Query: 126 KYFGEISQDTGKYVFGMDHTRRALKAGAVENLILRENLGLNRYVLKK------------- 172
KYF EISQDTGKYVFG++ T +AL+ GAVE LI+ ENL +NRY LK
Sbjct: 289 KYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGK 348
Query: 173 -QRNRQ------------------------------FGCSLEFVTNKSVEDSQFCSGFDG 201
Q N Q FGC+LEFVTNKS E SQFC GF G
Sbjct: 349 DQENNQSNFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGG 408
Query: 202 IGGILRYQLDMKM---LPDGE 219
IGG+LRYQLDM+ L DGE
Sbjct: 409 IGGLLRYQLDMRTFDELSDGE 429
Score = 92.0 bits (227), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 8/85 (9%)
Query: 7 TDKKIEIRKMKKLIKALGAAKGNGISMISVIVHPCDEIDRTVRML----GAVSNINSRVD 62
+DK IEI K+KKLIK L A+GNG SMIS+I+ P D++ R +ML G SNI SRV+
Sbjct: 6 SDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKSRVN 65
Query: 63 SQSVL----DAQERLKPYNKVPPNG 83
QSVL AQ+RLK YNKVPPNG
Sbjct: 66 RQSVLSAITSAQQRLKLYNKVPPNG 90
>AT5G47880.2 | eukaryotic release factor 1-1 |
Chr5:19386555-19387865 REVERSE LENGTH=436 | 201606
Length = 436
Score = 113 bits (283), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 75/140 (53%), Gaps = 46/140 (32%)
Query: 126 KYFGEISQDTGKYVFGMDHTRRALKAGAVENLILRENLGLNRYVLKKQRN---------- 175
KYF EISQDTGKYVFG++ T AL++GA+E LI+ ENL +NRYV+K
Sbjct: 290 KYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNK 349
Query: 176 ----------------------------------RQFGCSLEFVTNKSVEDSQFCSGFDG 201
R+FGC+LEFVTNKS E SQFC GF G
Sbjct: 350 EQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGG 409
Query: 202 IGGILRYQLDMKML--PDGE 219
IGGILRYQLDM DGE
Sbjct: 410 IGGILRYQLDMTAFDSEDGE 429
Score = 94.0 bits (232), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 64/91 (70%), Gaps = 8/91 (8%)
Query: 1 MWDGDITDKKIEIRKMKKLIKALGAAKGNGISMISVIVHPCDEIDRTVRML----GAVSN 56
M D + DK IEI K+KKLIK+L AA+GNG SMIS+I+ P D++ R +ML G SN
Sbjct: 1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 57 INSRVDSQSVL----DAQERLKPYNKVPPNG 83
I SRV+ QSVL AQ+RLK YN+VPPNG
Sbjct: 61 IKSRVNRQSVLGAITSAQQRLKLYNRVPPNG 91
>AT5G47880.1 | eukaryotic release factor 1-1 |
Chr5:19386555-19387865 REVERSE LENGTH=436 | 201606
Length = 436
Score = 113 bits (283), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 75/140 (53%), Gaps = 46/140 (32%)
Query: 126 KYFGEISQDTGKYVFGMDHTRRALKAGAVENLILRENLGLNRYVLKKQRN---------- 175
KYF EISQDTGKYVFG++ T AL++GA+E LI+ ENL +NRYV+K
Sbjct: 290 KYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNK 349
Query: 176 ----------------------------------RQFGCSLEFVTNKSVEDSQFCSGFDG 201
R+FGC+LEFVTNKS E SQFC GF G
Sbjct: 350 EQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGG 409
Query: 202 IGGILRYQLDMKML--PDGE 219
IGGILRYQLDM DGE
Sbjct: 410 IGGILRYQLDMTAFDSEDGE 429
Score = 94.0 bits (232), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 64/91 (70%), Gaps = 8/91 (8%)
Query: 1 MWDGDITDKKIEIRKMKKLIKALGAAKGNGISMISVIVHPCDEIDRTVRML----GAVSN 56
M D + DK IEI K+KKLIK+L AA+GNG SMIS+I+ P D++ R +ML G SN
Sbjct: 1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 57 INSRVDSQSVL----DAQERLKPYNKVPPNG 83
I SRV+ QSVL AQ+RLK YN+VPPNG
Sbjct: 61 IKSRVNRQSVLGAITSAQQRLKLYNRVPPNG 91
>AT1G12920.1 | eukaryotic release factor 1-2 | Chr1:4396555-4397859
REVERSE LENGTH=434 | 201606
Length = 434
Score = 109 bits (273), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 72/134 (53%), Gaps = 44/134 (32%)
Query: 126 KYFGEISQDTGKYVFGMDHTRRALKAGAVENLILRENLGLNRYVLKKQRN---------- 175
KYF EISQDTGKYVFG++ T +AL+ GA+E LI+ ENL +NRY LK
Sbjct: 288 KYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHFGK 347
Query: 176 ----------------------------------RQFGCSLEFVTNKSVEDSQFCSGFDG 201
++FGC+LEFVTNKS E SQFC GF G
Sbjct: 348 DQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGG 407
Query: 202 IGGILRYQLDMKML 215
IGG+LRYQLDM+
Sbjct: 408 IGGMLRYQLDMRTF 421
Score = 87.4 bits (215), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 8/84 (9%)
Query: 8 DKKIEIRKMKKLIKALGAAKGNGISMISVIVHPCDEIDRTVRML----GAVSNINSRVDS 63
D IEI K+KKLIK L +A+GNG SMIS+I+ P D++ R +ML G SNI SRV+
Sbjct: 6 DTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNR 65
Query: 64 QSVL----DAQERLKPYNKVPPNG 83
QSVL AQ+RLK YNKVP NG
Sbjct: 66 QSVLSAITSAQQRLKLYNKVPTNG 89