BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1610.1
(224 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52420.1 | transmembrane protein | Chr5:21281817-21282545 FOR... 219 6e-72
AT5G23920.1 | transmembrane protein | Chr5:8073363-8074118 REVER... 146 1e-43
AT1G27990.1 | transmembrane protein | Chr1:9752799-9753919 REVER... 121 2e-33
>AT5G52420.1 | transmembrane protein | Chr5:21281817-21282545
FORWARD LENGTH=242 | 201606
Length = 242
Score = 219 bits (558), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 141/201 (70%)
Query: 23 SFSQLNALALIIVLSASGMVSIQDFSIVVVSFFYIFFLSKVAFPPLSASIENPPICGEKN 82
SF QLN LA+IIVLSASG+V+IQDF +++ Y FFLSK+ FPP + + P+ N
Sbjct: 41 SFRQLNILAIIIVLSASGLVTIQDFIFTILTLIYFFFLSKLIFPPHNNPNRDAPLTSSTN 100
Query: 83 RILTIYVSIAALIGLFLPIAYIFHGINEGDKKEIKAAAPHVFLLASQVFMEGVTYSGRFS 142
+I IYV+ A ++GL +PI YIF GI E DK + AAAPHVFLLASQ+FMEG+ FS
Sbjct: 101 KIFRIYVTAAGIVGLIIPICYIFEGIVEDDKNGVSAAAPHVFLLASQIFMEGLATMFGFS 160
Query: 143 LPIRVMVHVFYNAMRVLSIMEWLKAEMGKVDEVYSGSEMRLYIGRGLAFANMGFWPFNLF 202
P R++V + YNA RVL+++EW+ +E + D + S R+Y G+ LA AN+G W FNLF
Sbjct: 161 APARILVPIVYNARRVLTLVEWIMSEFSREDVTGTVSARRMYAGKVLAAANLGIWSFNLF 220
Query: 203 GFLLPVFAPRAFKRYYGYKEK 223
G L+PV+ PRAFKRYYG ++
Sbjct: 221 GVLIPVYLPRAFKRYYGSDKE 241
>AT5G23920.1 | transmembrane protein | Chr5:8073363-8074118 REVERSE
LENGTH=229 | 201606
Length = 229
Score = 146 bits (369), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 4/199 (2%)
Query: 26 QLNALALIIVLSASGMVSIQDFSIVVVSFFYIF-FLSKVAFPPLSASIENPPICGEKNRI 84
QL L+ +I+L+A G+V I + + V++ + Y++ FLS+ AFP + + + KN++
Sbjct: 32 QLVFLSFMILLAAKGLVGIGEIAFVILCYIYLYEFLSRFAFPR-KQTEQKKRLSNPKNKL 90
Query: 85 LTIYVSIAALIGLFLPIAYIFHGINEGDKKEIKAAAPHVFLLASQVFMEGVTYSGRFSLP 144
Y A+IGL P+ YI GI GD AAAPH+FLL+ Q F E + +S ++S+P
Sbjct: 91 FQAYFLATAIIGLLFPLCYIGDGIYRGDIHGAGAAAPHLFLLSGQAFTEPIGFSDKYSMP 150
Query: 145 IRVMVHVFYNAMRVLSIMEWLKAEMGKVDEVYSGSEMRLYIGRGLAFANMGFWPFNLFGF 204
I ++ VFYNA R+ ++++W+KAE D G +RLY GR +A N W +NLFG
Sbjct: 151 IGILGPVFYNARRIFALLDWVKAEFS--DTQRPGGPLRLYGGRVIASVNTVMWFYNLFGL 208
Query: 205 LLPVFAPRAFKRYYGYKEK 223
LLPVF PR+ + Y+ K
Sbjct: 209 LLPVFLPRSCEIYFSGDNK 227
>AT1G27990.1 | transmembrane protein | Chr1:9752799-9753919 REVERSE
LENGTH=271 | 201606
Length = 271
Score = 121 bits (303), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 5/203 (2%)
Query: 26 QLNALALIIVLSASGMVSIQDFSIVVVSFFYIFFLSKVAFPPLSASIENPPICGEKNRIL 85
+L +A I+V SASG+V I D + YI LS++AFP S +P + +++
Sbjct: 47 ELQLVAFILVFSASGLVPILDMLFPAFASIYIIALSRLAFPSHGVSTASPEVF-RGSKLF 105
Query: 86 TIYVSIAALIGLFLPIAYIFHGINEGDKKEIKAAAPHVFLLASQVFMEGVTYS-GRFSLP 144
+YV IGLFLP+AY+ G GD +++A PH+FLL+ Q+ E V FS P
Sbjct: 106 RLYVISGTTIGLFLPLAYVLGGFARGDDHAVRSATPHLFLLSCQILTENVISGLSLFSPP 165
Query: 145 IRVMVHVFYNAMRVLSIMEWLK-AEMGKVDEVYSGSEM--RLYIGRGLAFANMGFWPFNL 201
+R +V + Y R+ I+ W K K + + + + GR LA AN+G++ NL
Sbjct: 166 VRALVPLLYTVWRIFVIIGWSKDVWFNKSLPINATPNVVTWFWFGRYLALANLGYFGVNL 225
Query: 202 FGFLLPVFAPRAFKRYYGYKEKV 224
FL+P F PRAF++Y+ ++++
Sbjct: 226 LCFLIPRFLPRAFEQYFRERDEI 248