BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1660.1
(674 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 102 2e-22
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 88 1e-17
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 87 2e-17
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 87 2e-17
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 77 9e-15
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 22/328 (6%)
Query: 3 WLSTYPHS-RVQHLPGVGSDHLPILLSTNPLVPKGGKPFKFIRTWMTHPDCRTFIQDNWL 61
W S++P + V L GV SDH P ++ L + K F++ THP + W
Sbjct: 295 WFSSFPSAIAVFELSGV-SDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWE 353
Query: 62 LSPTL------IQQKLNFLAINLSKWNKKVFGHIENRIKNLISSI-----QTTINP-NTL 109
+ + + L N++ FG+I+++ K + S+ Q NP ++L
Sbjct: 354 EQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSL 413
Query: 110 LSLYSQLEEAYN----QQERIWKEKSRVANIQLGDRNTRFFHAKAITRNRKYHITTIKRE 165
+ + +N E +++KSR+ +Q GD NTRFFH + K I ++ +
Sbjct: 414 FRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMD 473
Query: 166 DNFWCSDSSEISQIFFDKLKIISTSSSS----GNSGIIQNLFQTQITNSQNLVLTSIPNE 221
D+ + +++ ++ + S S + I+++ + ++ L+++P++
Sbjct: 474 DDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSD 533
Query: 222 DEIRNATFSLKPEAAPGPDGFPPFFYQANWETVKLDIIQMVTNFFLSSLLPPCTNHTHIC 281
EI A F++ APGPD F F+ +W VK I V FF + L N T I
Sbjct: 534 KEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAIT 593
Query: 282 LIPKSKSPQSTADFRPINLLNTTYKIIT 309
LIPK + FRP++ YKIIT
Sbjct: 594 LIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Query: 466 INHLLFADDCIIFGCNTLDNISTLINILNAFGLECGQIINYNKSTIFFSKKTHPKFKRMI 525
I HL FADD ++F +I ++ I F G I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 526 SKALKVHQASSVDNYLGSKLFIGAKKTQAFTSLIDQIQNKLSKWKTNLLSQAGRSVVIST 585
+ + YLG L T + L+++I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 586 VAAVVPRYQMQCFAIPKGVSQRIETIQRSFWWGKSK---SIHTINWSSICRPRRYGGLGF 642
V + + M F +P + I++I SF W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 643 RLHILDNEAFLSKLSWRLL 661
R N+ L KL WR+L
Sbjct: 187 RSLKEANKVSLLKLIWRML 205
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Query: 466 INHLLFADDCIIFGCNTLDNISTLINILNAFGLECGQIINYNKSTIFFSKKTHPKFKRMI 525
I HL FADD ++F +I ++ I F G I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 526 SKALKVHQASSVDNYLGSKLFIGAKKTQAFTSLIDQIQNKLSKWKTNLLSQAGRSVVIST 585
+ + YLG L T + L+++I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 586 VAAVVPRYQMQCFAIPKGVSQRIETIQRSFWWGKSK---SIHTINWSSICRPRRYGGLGF 642
V + + M F +P + I++I SF W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 643 RLHILDNEAFLSKLSWRLL 661
R N+ L KL WR+L
Sbjct: 187 RSLKEANKVSLLKLIWRML 205
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Query: 466 INHLLFADDCIIFGCNTLDNISTLINILNAFGLECGQIINYNKSTIFFSKKTHPKFKRMI 525
I HL FADD ++F +I ++ I F G I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAG-VKDNDKADI 66
Query: 526 SKALKVHQASSVDNYLGSKLFIGAKKTQAFTSLIDQIQNKLSKWKTNLLSQAGRSVVIST 585
+ + YLG L T + L+++I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 586 VAAVVPRYQMQCFAIPKGVSQRIETIQRSFWWGKSK---SIHTINWSSICRPRRYGGLGF 642
V + + M F +P + I++I SF W + + WS +C P+ GGLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 643 RLHILDNEAFLSKLSWRLL 661
R N+ L KL WR+L
Sbjct: 187 RSLKEANKVSLLKLIWRML 205
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 312 LANRLKTTLPDIISPYQAAYVPGRQITDNIIISQEVARSFKSKRGSKSFFGLKLDMSKAF 371
+ RLK + ++I P QA+++PGR TDNI+ QE S + K+G K + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 372 DRVEWSYLVSIMAKPGYDPHWI 393
DR+ W YL + G+ W+
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWL 82