BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000066.1_g1690.1
(168 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60440.1 | AGAMOUS-like 62 | Chr5:24306329-24307520 FORWARD L... 138 2e-40
AT2G24840.1 | AGAMOUS-like 61 | Chr2:10581082-10581876 FORWARD L... 126 4e-36
AT1G01530.1 | AGAMOUS-like 28 | Chr1:192640-193662 REVERSE LENGT... 108 2e-29
AT4G36590.1 | MADS-box transcription factor family protein | Chr... 108 3e-29
AT2G34440.1 | AGAMOUS-like 29 | Chr2:14526950-14527468 FORWARD L... 103 3e-28
>AT5G60440.1 | AGAMOUS-like 62 | Chr5:24306329-24307520 FORWARD
LENGTH=299 | 201606
Length = 299
Score = 138 bits (347), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 7/167 (4%)
Query: 4 RSSTGRQRIEIRRIQNEESRQVTFSKCRAGVFKKASELSILCCAEVAIVVFSSAGKAFSF 63
+ S GRQ+IE+ +++NE + QVTFSK R+G+FKKASEL LC AEVAIVVFS K FSF
Sbjct: 3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62
Query: 64 GHPSVNSVTNRFLTRNT----NHDNLMASVLEANRRVVVEDLNNQCNDTITQIEAEKKRG 119
GHP+V+SV +RF+ N H+N+ + E R +V+DLNN ++Q+E EKK+
Sbjct: 63 GHPNVDSVIDRFINNNPLPPHQHNNM--QLRETRRNSIVQDLNNHLTQVLSQLETEKKKY 120
Query: 120 QELDQARQAT-VNQFWWESHIDHIGLEELVLLKNYMGSLNNQITVRS 165
EL + R+ T WWE ++ + L +L K + +L +TV +
Sbjct: 121 DELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEA 167
>AT2G24840.1 | AGAMOUS-like 61 | Chr2:10581082-10581876 FORWARD
LENGTH=264 | 201606
Length = 264
Score = 126 bits (316), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 5/159 (3%)
Query: 6 STGRQRIEIRRIQNEESRQVTFSKCRAGVFKKASELSILCCAEVAIVVFSSAGKAFSFGH 65
S GRQ+I + +I+ E RQVTFSK RAG+FKKASEL LC AE+ I+VFS A K FSFGH
Sbjct: 61 SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGH 120
Query: 66 PSVNSVTNRFLTRNTNHDNLMASVLEANRRVVVEDLNNQCNDTITQIEAEKKRGQELDQA 125
PSV SV +R+++RN N + L+ + E LN Q ++++E EKK+GQ +++
Sbjct: 121 PSVESVLDRYVSRN-NMSLAQSQQLQGSPAASCE-LNMQLTHILSEVEEEKKKGQAMEEM 178
Query: 126 RQATVNQF---WWESHIDHIGLEELVLLKNYMGSLNNQI 161
R+ +V + WWE ++ + + +L +K + L +
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217
>AT1G01530.1 | AGAMOUS-like 28 | Chr1:192640-193662 REVERSE
LENGTH=247 | 201606
Length = 247
Score = 108 bits (270), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 104/166 (62%), Gaps = 12/166 (7%)
Query: 1 MARRSSTGRQRIEIRRIQNEESRQVTFSKCRAGVFKKASELSILCCAEVAIVVFSSAGKA 60
MAR++ GR++IE+ ++ NE + QVTFSK R+G+FKK SEL LC AE+AI+VFS +GKA
Sbjct: 1 MARKN-LGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKA 59
Query: 61 FSFGHPSVNSVTNRFLTRNTNHDNLMASVLEANRRVVVEDLNNQCNDTITQIEAEKKRGQ 120
+SFGHP+VN + + L R H+N + E+ ++ ++ L N+++T++ AEK++ Q
Sbjct: 60 YSFGHPNVNKLLDHSLGRVIRHNN--TNFAESRTKLRIQML----NESLTEVMAEKEKEQ 113
Query: 121 ELDQA-----RQATVNQFWWESHIDHIGLEELVLLKNYMGSLNNQI 161
E Q+ R+ + WW + + L + +K + +L ++
Sbjct: 114 ETKQSIVQNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEV 159
>AT4G36590.1 | MADS-box transcription factor family protein |
Chr4:17261146-17262189 REVERSE LENGTH=248 | 201606
Length = 248
Score = 108 bits (269), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 10/151 (6%)
Query: 4 RSSTGRQRIEIRRIQNEESRQVTFSKCRAGVFKKASELSILCCAEVAIVVFSSAGKAFSF 63
RS+ GRQ+IE+++++NE + QVTFSK R G+FKKASEL L AE+ ++VFS GK FSF
Sbjct: 3 RSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSF 62
Query: 64 GHPSVNSVTNRFLTRNTN-----HDNLMASVLEANRRVVVEDLNNQCNDTITQIEAEKKR 118
GHPSV + +RF N N H N ++E ++ LNN + + E EK++
Sbjct: 63 GHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQK 122
Query: 119 GQELD---QARQATVNQFWWESHIDHIGLEE 146
LD ++R+ N W+E + + + E
Sbjct: 123 RMVLDLLKESREQVGN--WYEKDVKDLDMNE 151
>AT2G34440.1 | AGAMOUS-like 29 | Chr2:14526950-14527468 FORWARD
LENGTH=172 | 201606
Length = 172
Score = 103 bits (257), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 99/154 (64%), Gaps = 2/154 (1%)
Query: 8 GRQRIEIRRIQNEESRQVTFSKCRAGVFKKASELSILCCAEVAIVVFSSAGKAFSFGHPS 67
GR++I++ +Q+ +RQVTFSK R G+FKKASEL+ LC AE+ IVVFS GK FS+G P+
Sbjct: 2 GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61
Query: 68 VNSVTNRFLTRNTNHDNLMASVLEANRRVVVEDLNNQCNDTITQIEAEKKRGQELDQARQ 127
++SV RF+ + D+ N R ++ L+ + + ++EAEK+RG++ + +
Sbjct: 62 LDSVAERFMREYDDSDS-GDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120
Query: 128 ATVNQFWWESHIDHIGLEELVLLKNYMGSLNNQI 161
+ ++ + ES I+ + L+EL K+ + +++ +I
Sbjct: 121 SAGDERFKES-IETLTLDELNEYKDRLQTVHGRI 153